Table II. Assignment of the inflorescence transcriptome changes to functional categories using MapMan.
The 1,294 genes that changed 3-fold or more and that did not include the stamen/pollen-associated gene set were characterized. Functional categories showing a significant change (P ≤ 0.05) after correction for multiple testing by the Benjamini-Hochberg (BH) method are shown. Percentage indicates the number of up- or down-regulated genes expressed as a percentage of the total number of genes in each BIN. The complete list of genes for each category can be found in Supplemental Table S10.
| BIN | Functional Category | Percentage | BH-Adjusted P Value |
|---|---|---|---|
| Up-regulated gene functions | |||
| 27 | RNA | 66 | 4.21E-3 |
| 27.3 | RNA regulation of transcription | 77 | 4.21E-3 |
| 29.5 | Protein degradation | 73 | 1.76E-3 |
| 29.5.11 | Protein degradation, ubiquitin | 96 | 2.58E-8 |
| 29.5.11.4 | Protein degradation, ubiquitin E3 | 96 | 9.71E-8 |
| 29.5.11.4.2 | Protein degradation, ubiquitin E3 RING | 93 | 9.67E-4 |
| 29.5.11.4.3.2 | Protein degradation, ubiquitin E3 SCF F-box | 100 | 1.36E-2 |
| Down-regulated gene functions | |||
| 1 | Photosynthesis | 93 | 1.38E-2 |
| 28.1.3 | DNA synthesis, chromatin structure histone | 100 | 7.78E-3 |