Table 3. Genetic based estimates of effective population size
(MBT, TM3) and
(LDNe, ONeSAMP) and comparison with the demographic estimates of the inbreeding effective number of breeders
for four populations of O. reticulata.
Frag | Ref | Year |
![]() |
MBT | TM3 | LDNe | ONeSAMP | |
ORF1 | 170 | 1990 | 58 | 243 (52 - ∞) | 64 (30–242) | 55 (31–156) | 37 (32–50) | |
ORF1 | 170 | 2000 | 65 | 34 (21–73) | 37 (32–56) | |||
ORF3 | s84 | 1990 | –** | 45 (17- 364) | 26 (13–74) | 16 (10–25) | 25 (21–35) | |
ORF3 | s84 | 2000 | 1 | 14 (7–30) | 24 (20–35) | |||
ORF7 | 168 | 1990 | 12 | 27 (13–64) | 17 (10–33) | 20 (14–30) | 27 (24–31) | |
ORF7 | 168 | 2000 | 58 | 25 (17–40) | 27 (25–32) | |||
ORF8 | 175 | 1990 | 21 | 132 (37– ∞) | 104 (19–999*) | 118 (44– ∞) | 48 (37–81) | |
ORF8 | 175 | 2000 | 48 | 37 (22–80) | 45 (35–68) |
MBT: moment based temporal method; TM3: likelihood based temporal method. LDNe: the linkage disequilibrium method with bias correction; ONeSAMP is a program that uses summary statistics and approximate Bayesian computation. Lower and upper 95% confidence intervals are in brackets. *: TM3 did not produce upper confidence intervals below the imposed boundary of 999 individuals. **: no estimate possible due to too few of offspring.