Table 4.
Structural variants in the FVB/NJ genome
Deletion | Duplication | Inversion | Insertion | Deletion in gain | Deletion + insertion | Inversion + deletion or insertion | |
---|---|---|---|---|---|---|---|
Total | 15,358 | 137 | 67 | 14,246 | 58 | 111 | 71 |
Genes | 280 | 109 | 1 | 20 | 2 | 0 | 4 |
Listed are the number of SVs by type, and the number of genes with at least one protein-coding exon overlapping a SV. The following SV types involve more than one SV and have been described by Yalcin et al. [15,28]: a 'deletion in gain' is a deletion that is found within a duplicated region; a 'deletion plus insertion' is a deletion that co-occurs with an insertion; and an 'inversion plus a deletion or insertion' is an inversion flanked by one or more deletions or insertions.