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. 2012 Oct 28;8(10):1363–1374. doi: 10.7150/ijbs.5106

Table 2.

miRNAs included in the RT-qPCR analysis regarding their metastatic association.

Selected miRNAs by microarray analysis
Microarray RT-qPCR
No. miRNA Fold changes P Fold changes P
1 miR-10b -2.29 0.001 -3.91 <0.0001
2 miR-19a -2.76 0.001 -1.94 <0.0001
3 miR-19b -1.68 0.003 -1.71 <0.0001
4 miR-21 +1.65 0.035 +1.23 0.986
5 miR-29a -1.78 0.003 -1.98 0.0004
6 miR-29b -3.36 0.001 -4.28 <0.0001
7 miR-29c -3.63 0.001 -4.00 <0.0001
8 miR-100 -2.40 0.025 -1.87 0.007
9 miR-101 -2.17 0.001 -3.57 0.001
10 miR-126 -2.76 0.001 -2.60 0.002
11 miR-130a -1.76 0.013 -1.78 0.019
12 miR-143 -2.51 0.015 -2.44 0.011
13 miR-145 -2.80 0.005 -2.56 0.001
14 miR-148a -2.10 0.009 -1.65 0.039
15 miR-192 -2.98 0.013 -5.13 0.001
16 miR-194 -3.40 0.010 -7.05 0.0002
17 miR-195 -2.31 0.021 -2.55 0.054
18 miR-223 +2.83 0.013 -1.02 0.824
19 miR-370 +11.3 0.001 +1.43 0.905
20 miR-451 +4.79 0.013 +1.60 0.403
21 miR-494 +5.73 0.001 +1.17 0.063
22 miR-575 +7.87 0.001 see Note§ -
23 miR-630 +15.2 0.001 see Note§ -
24 miR-638 +5.93 0.001 +1.56 0.030
Selected miRNAs from a ccRCC-specific miRNA panel 17
1 miR-141 - - -3.91 <0.0001
2 miR-155 - - +1.52 0.267
3 miR-200c - - -2.62 0.004
4 miR-210 - - -1.54 0.063
5 miR-224 - - +1.38 0.484
6 miR-514 - - -3.78 0.007
Selected miRNAs after literature search
1 let-7f Gottardo et al. 14 see Note§
2 miR-20a Chow et al. 29 -1.40 0.002
3 miR-26a Liu et al. 31, Chow et al. 30, Heinzelmann et al. 20 -2.11 <0.0001
4 miR-106b Chow et al. 30, Slaby et al. 19 see Note§
5 miR-125b Liu et al. 31 see Note§
6 miR-127 Saito et al .28 -1.43 0.091
7 miR-215 Nakada et al. 15 -7.28 0.007
8 miR-296 Juan et al. 18 +3.55 0.001

miRNAs investigated in this study were chosen on the basis of the microarray-based selection of metastamirs in the present study, a specific panel of differentially expressed miRNAs in renal cell carcinoma described in a previous study 17 and literature data as indicated. Fold changes in metastatic to primary renal cell carcinoma samples (see Figure 1 and Supplementary Material: Table S1). Symbols: +, up-regulation; -, down-regulation. §miRNAs in italics showed Cq values >35 in RT-qPCR of the pooled samples and were therefore excluded in subsequent analyses.