Table 2.
Selected miRNAs by microarray analysis | |||||
Microarray‡ | RT-qPCR‡ | ||||
No. | miRNA | Fold changes | P | Fold changes | P |
1 | miR-10b | -2.29 | 0.001 | -3.91 | <0.0001 |
2 | miR-19a | -2.76 | 0.001 | -1.94 | <0.0001 |
3 | miR-19b | -1.68 | 0.003 | -1.71 | <0.0001 |
4 | miR-21 | +1.65 | 0.035 | +1.23 | 0.986 |
5 | miR-29a | -1.78 | 0.003 | -1.98 | 0.0004 |
6 | miR-29b | -3.36 | 0.001 | -4.28 | <0.0001 |
7 | miR-29c | -3.63 | 0.001 | -4.00 | <0.0001 |
8 | miR-100 | -2.40 | 0.025 | -1.87 | 0.007 |
9 | miR-101 | -2.17 | 0.001 | -3.57 | 0.001 |
10 | miR-126 | -2.76 | 0.001 | -2.60 | 0.002 |
11 | miR-130a | -1.76 | 0.013 | -1.78 | 0.019 |
12 | miR-143 | -2.51 | 0.015 | -2.44 | 0.011 |
13 | miR-145 | -2.80 | 0.005 | -2.56 | 0.001 |
14 | miR-148a | -2.10 | 0.009 | -1.65 | 0.039 |
15 | miR-192 | -2.98 | 0.013 | -5.13 | 0.001 |
16 | miR-194 | -3.40 | 0.010 | -7.05 | 0.0002 |
17 | miR-195 | -2.31 | 0.021 | -2.55 | 0.054 |
18 | miR-223 | +2.83 | 0.013 | -1.02 | 0.824 |
19 | miR-370 | +11.3 | 0.001 | +1.43 | 0.905 |
20 | miR-451 | +4.79 | 0.013 | +1.60 | 0.403 |
21 | miR-494 | +5.73 | 0.001 | +1.17 | 0.063 |
22 | miR-575 | +7.87 | 0.001 | see Note§ | - |
23 | miR-630 | +15.2 | 0.001 | see Note§ | - |
24 | miR-638 | +5.93 | 0.001 | +1.56 | 0.030 |
Selected miRNAs from a ccRCC-specific miRNA panel 17 | |||||
1 | miR-141 | - | - | -3.91 | <0.0001 |
2 | miR-155 | - | - | +1.52 | 0.267 |
3 | miR-200c | - | - | -2.62 | 0.004 |
4 | miR-210 | - | - | -1.54 | 0.063 |
5 | miR-224 | - | - | +1.38 | 0.484 |
6 | miR-514 | - | - | -3.78 | 0.007 |
Selected miRNAs after literature search | |||||
1 | let-7f | Gottardo et al. 14 | see Note§ | ||
2 | miR-20a | Chow et al. 29 | -1.40 | 0.002 | |
3 | miR-26a | Liu et al. 31, Chow et al. 30, Heinzelmann et al. 20 | -2.11 | <0.0001 | |
4 | miR-106b | Chow et al. 30, Slaby et al. 19 | see Note§ | ||
5 | miR-125b | Liu et al. 31 | see Note§ | ||
6 | miR-127 | Saito et al .28 | -1.43 | 0.091 | |
7 | miR-215 | Nakada et al. 15 | -7.28 | 0.007 | |
8 | miR-296 | Juan et al. 18 | +3.55 | 0.001 |
†miRNAs investigated in this study were chosen on the basis of the microarray-based selection of metastamirs in the present study, a specific panel of differentially expressed miRNAs in renal cell carcinoma described in a previous study 17 and literature data as indicated. ‡Fold changes in metastatic to primary renal cell carcinoma samples (see Figure 1 and Supplementary Material: Table S1). Symbols: +, up-regulation; -, down-regulation. §miRNAs in italics showed Cq values >35 in RT-qPCR of the pooled samples and were therefore excluded in subsequent analyses.