Table 1.
Validation scores for 20 most significant clusters identified by Ensemble NMF on Collins data, based on MIPS complexes
| MIPS complex | Precision | Recall |
|---|---|---|
| 20S proteasome | 1.00 | 0.88 |
| Anaphase promoting complex (APC) | 1.00 | 0.80 |
| H+-transporting ATPase vacuolar | 1.00 | 0.64 |
| Post-replication complex | 1.00 | 1.00 |
| Pre-replication complex (pre-RC) | 1.00 | 0.60 |
| Replication complex | 1.00 | 0.40 |
| Replication initiation complex | 1.00 | 0.75 |
| Septin filaments | 1.00 | 1.00 |
| TRAPP complex | 1.00 | 0.70 |
| RNA polymerase I | 0.93 | 0.59 |
| SWI/SNF activator complex | 0.89 | 0.89 |
| COPI | 0.88 | 1.00 |
| Exocyst complex | 0.88 | 1.00 |
| Kornbergs mediator (SRB) complex | 0.86 | 1.00 |
| Signal recognition particle (SRP) | 0.86 | 1.00 |
| Gim complexes | 0.83 | 1.00 |
| TFIIIC | 0.83 | 1.00 |
| 19/22S regulator | 0.78 | 1.00 |
| Arp2p/Arp3p complex | 0.71 | 1.00 |
| Class C Vps protein complex | 0.67 | 1.00 |