Table 3.
Descriptives of the CpG sites from the 27K methylation array
| |
|
|
Methylation frequency (beta-value) |
|
|---|---|---|---|---|
| Gene | ILMNIDa | Relation to CGI | Mean | Range |
|
RASSF1 |
cg00777121 |
CGI |
0.69 |
0.13-0.95 |
| |
cg06063729 |
CGI |
0.02 |
0-0.05 |
| |
cg06821120 |
CGI |
0.12 |
0.02-0.64 |
| |
cg06980053 |
CGI |
0.20 |
0.06-0.59 |
| |
cg08047457 |
CGI |
0.75 |
0.05-0.99 |
| |
cg11035216 |
CGI |
0.02 |
0-0.03 |
| |
cg15043975 |
CGI |
0.06 |
0.04-0.11 |
| |
cg21554552 |
CGI |
0.61 |
0.04-0.96 |
| |
cg26357744 |
CGI |
0.01 |
0-0.04 |
|
RASSF2 |
cg16884569 |
CGI |
0.01 |
0-0.03 |
| |
cg19614321 |
CGI shore |
0.06 |
0.01-0.27 |
|
RASSF3 |
cg07915282 |
CGI |
0.02 |
0-0.07 |
| |
cg12157010 |
CGI |
0.01 |
0-0.02 |
|
RASSF4 |
cg13603099 |
CGI shore |
0.01 |
0-0.02 |
| |
cg17324128 |
CGI |
0.10 |
0.04-0.24 |
|
RASSF5 |
cg01860753 |
CGI |
0.18 |
0.04-0.38 |
| |
cg02589695 |
CGI |
0.23 |
0.06-0.51 |
| |
cg08617916 |
CGI |
0.01 |
0-0.02 |
| |
cg10167296 |
CGI |
0.04 |
0.02-0.1 |
| |
cg17558126 |
CGI |
0.13 |
0.03-0.43 |
| |
cg19452316 |
CGI |
0.04 |
0-0.08 |
| |
cg22857604 |
CGI |
0.04 |
0-0.1 |
| |
cg23520347 |
CGI |
0.05 |
0.01-0.09 |
| |
cg24450312 |
CGI |
0.09 |
0.02-0.16 |
|
RASSF6 |
cg03996822 |
CGI shore |
0.39 |
0-0.94 |
| |
cg08647446 |
CGI |
0.12 |
0.05-0.54 |
|
RASSF7 |
cg14896003 |
CGI shore |
0.96 |
0.89-1.0 |
|
RASSF8 |
cg07469792 |
CGI |
0.01 |
0-0.03 |
| cg22946876 | CGI | 0.00 | 0-0.03 |
ILMNID, Illumina ID; CGI, CpG island.
ahttp://www.illumina.com/Documents/products/technotes/technote_cpg_loci_identification.pdf