Table 1. List of organisms with an identifiable FoxJ1 based on reverse BLAST and/or phylogenetic analyses.
| S. No. | Supergroup | Group | Phylum/subphylum | Organism | E-value | Reverse BLAST | Annotation | Phylogeny (domain) | Bootstrap | Phylogeny (Full length)* | Bootstrap* |
| 1 | Opisthokonta | Animalia | Placozoa | Trichoplax adhaerens | 8E-38 | FoxJ1 | Hypothetical protein TRIADDRAFT_17444 | FoxJ1 | 99 | ||
| 2 | Opisthokonta | Animalia | Cnidaria | Hydra magnipapillata | 9E-32 | FoxJ1 | Similar to FoxJ1 | FoxJ1 | 49 | ||
| 3 | Opisthokonta | Animalia | Cnidaria | Nematostella vectensis | 3E-39 | FoxJ1 | Predicted protein | FoxJ1 | 99 | ||
| 4 | Opisthokonta | Animalia | Annelida | Capitella sp. I | 4E-47 | FoxJ1 | e_gw1.802.18.1 | FoxJ1 | 99 | ||
| 5 | Opisthokonta | Animalia | Mollusca | Lottia gigantea | 2E-44 | FoxJ1 | Fgenesh2_pg.C_sca_5000409 | FoxJ1 | 99 | ||
| 6 | Opisthokonta | Animalia | Echinodermata | Strongylocentrotus purpuratus | 1E-37 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 7 | Opisthokonta | Animalia | Arthropoda | Daphnia pulex | 9E-36 | FoxJ1 | Hypothetical protein | FoxJ1 | 97 | ||
| 8 | Opisthokonta | Animalia | Arthropoda | Tribolium castaneum | 2E-32 | FoxJ1 | Hypothetical protein | FoxJ1 | 99 | ||
| 9 | Opisthokonta | Animalia | Arthropoda | Pediculus humanus corporis | 1E-34 | FoxJ1 | Forkhead protein/forkhead protein domain, putative | FoxJ1 | 99 | ||
| 10 | Opisthokonta | Animalia | Chordata | Branchiostoma floridae | 1E-37 | FoxJ1 | Hypothetical protein | FoxJ1 | 99 | ||
| 11 | Opisthokonta | Animalia | Chordata | Danio rerio | 3E-50/1e-43 | FoxJ1 | FoxJ1a/FoxJ1b | FoxJ1 | 100 (J1a), 99 (J1b) | ||
| 12 | Opisthokonta | Animalia | Chordata | Tetraodon nigroviridis | 1E-47/6e-41 | FoxJ1 | Unnamed protein product | FoxJ1 | 99 (J1), 99 (J1.2) | ||
| 13 | Opisthokonta | Animalia | Chordata | Fugu rubripes | 1E-58/4.16E-51 | FoxJ1 | e_gw2.514.3.1/e_gw2.3.885.1 | FoxJ1 | 100 (J1), 99 (J1.2) | ||
| 14 | Opisthokonta | Animalia | Chordata | Xenopus tropicalis | 5E-50/4e-41 | FoxJ1 | FoxJ1/FoxJ1.2 | FoxJ1 | 100 (J1), 99 (J1.2) | ||
| 15 | Opisthokonta | Animalia | Chordata | Gallus gallus | 1E-49 | FoxJ1 | Similar to FoxJ1 | FoxJ1 | 100 | ||
| 16 | Opisthokonta | Animalia | Chordata | Homo sapiens | 5E-51 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 17 | Opisthokonta | Animalia | Chordata | Mus musculus | 3E-51 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 18 | Opisthokonta | Animalia | Chordata | Rattus norvegicus | 1E-51 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 19 | Opisthokonta | Animalia | Chordata | Bos taurus | 1E-51 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 20 | Opisthokonta | Animalia | Chordata | Canis familiaris | 1E-50 | FoxJ1 | Similar to FoxJ1 | FoxJ1 | 100 | ||
| 21 | Opisthokonta | Animalia | Chordata | Pongo pygmaeus | 3.6E-75 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 22 | Opisthokonta | Animalia | Chordata | Cavia porcellus | 2.8E-75 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 23 | Opisthokonta | Animalia | Chordata | Erinaceus europaeus | 4.3E-58 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 24 | Opisthokonta | Animalia | Chordata | Loxodonta africana | 3.6E-75 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 25 | Opisthokonta | Animalia | Chordata | Gorilla gorilla | 4.4E-75 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 26 | Opisthokonta | Animalia | Chordata | Microcebus murinus | 3.6E-68 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 27 | Opisthokonta | Animalia | Chordata | Myotis lucifugus | 4.7E-71 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 28 | Opisthokonta | Animalia | Chordata | Ochotona princeps | 2.4E-75 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 29 | Opisthokonta | Animalia | Chordata | Procavia capensis | 3E-74 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 30 | Opisthokonta | Animalia | Chordata | Pteropus vampyrus | 6.1E-70 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 31 | Opisthokonta | Animalia | Chordata | Tupaia belangeri | 1.5E-46 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 32 | Opisthokonta | Animalia | Chordata | Felis catus | 1.8E-59 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 33 | Opisthokonta | Animalia | Chordata | Equus caballus | 8E-52 | FoxJ1 | Similar to FoxJ1 | FoxJ1 | 100 | ||
| 34 | Opisthokonta | Animalia | Chordata | Macaca mulatta | 8E-52 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 35 | Opisthokonta | Animalia | Chordata | Tursiops truncatus | 2.5E-74 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 36 | Opisthokonta | Animalia | Chordata | Monodelphis domestica | 9E-52 | FoxJ1 | Similar to forkhead transcription factor HFH-4 | FoxJ1 | 100 | ||
| 37 | Opisthokonta | Animalia | Chordata | Ornithorhynchus anatinus | 6E-51 | FoxJ1 | Similar to forkhead transcription factor HFH-4 | FoxJ1 | 100 | ||
| 38 | Opisthokonta | Animalia | Chordata | Oryctolagus cuniculus | 1E-51 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 39 | Opisthokonta | Animalia | Chordata | Pan troglodytes | 2E-51 | FoxJ1 | FoxJ1 | FoxJ1 | 100 | ||
| 40 | Opisthokonta | Animalia | Chordata | Taeniopygia guttata | 3E-38 | FoxJ1 | Similar to FoxJ1 | FoxJ1 | 99 | ||
| 41 | Opisthokonta | Fungi | Ascomycota | Aspergillus clavatus | 8E-27 | FoxJ1 | Forkhead transcription factor Fkh1/2, putative | Sister to FoxJ1–J3, FoxK1–K2 | Sister to FoxJ2 and FoxJ3 | 44 | |
| 42 | Opisthokonta | Fungi | Ascomycota | Aspergillus niger | 1E-27 | FoxJ1 | Forkhead transcription factor Fkh1/2 | Sister to FoxJ1–J3, FoxK1–K2 | Sister to FoxJ2 and FoxJ3 | 60 | |
| 43 | Opisthokonta | Fungi | Ascomycota | Candida glabrata | 1E-25 | FoxJ1 | Hypothetical protein | Sister to FoxK1–K2 | Sister to FoxP1–P4, FoxR1–R2 | 51 | |
| 44 | Opisthokonta | Fungi | Ascomycota | Eremothecium gossypii | 5E-26 | FoxJ1 | AER369Cp | FoxJ1 | 31 | Foxj1 | 66 |
| 45 | Opisthokonta | Fungi | Ascomycota | Saccharomyces cerevisiae | 2E-24 | FoxJ1 | Forkhead protein | Sister to FoxK1–K2 | Foxj1 | 48 | |
| 46 | Opisthokonta | Fungi | Ascomycota | Schizosaccharomyces pombe | 7E-25 | FoxD2 | Fork head transcription factor Fhl1 | Foxj1 | 52 | Unresolved | |
| 47 | Opisthokonta | fungi | Ascomycota | Aspergillus oryzae | 3E-27 | FoxJ1 | Forkhead transcription factor Fkh1/2 | Sister to FoxJ1–J3, FoxK1–K2 | Sister to FoxJ2 and FoxJ3 | 47 | |
| 48 | Opisthokonta | fungi | Ascomycota | Aspergillus terreus | 6E-27 | FoxJ1 | Forkhead box protein C2 | Sister to FoxJ1–J3, FoxK1–K2 | Sister to FoxJ2 and FoxJ3 | 46 | |
| 49 | Opisthokonta | Fungi | Ascomycota | Coccidioides immitis | 2E-25 | FoxJ1 | Hypothetical protein CIMG_03727 | FoxJ1 | 32 | Sister to FoxJ2 and FoxJ3 | 47 |
| 50 | Opisthokonta | Fungi | Ascomycota | Coccidioides posadasii | 3E-25 | FoxJ1 | Fork head domain containing protein | FoxJ1 | 32 | Foxj1 | 53 |
| 51 | Opisthokonta | Fungi | Ascomycota | Schizosaccharomyces japonicus | 3E-23 | FoxJ1 | Fork head transcription factor 1 | Sister to FoxO1, O3, O4, O6 | Sister to FoxP1–P4, FoxR1–R2 | 59 | |
| 52 | Opisthokonta | Fungi | Ascomycota | Stagonospora nodorum | 9E-23 | FoxJ1 | Hypothetical protein SNOG_11882 | Sister to FoxJ1–J3, FoxK1–K2 | Unresolved | ||
| 53 | Opisthokonta | Fungi | Basidiomycota | Laccaria bicolor | 4E-15 | FoxJ1 | Predicted protein | Sister to FoxP1–P4 | Foxh1 | 52 | |
| 54 | Opisthokonta | Fungi | Microsporidia | Encephalitozoon cuniculi | 2E-26 | FoxJ1 | Transcription factor (forkhead domain) | Sister to FoxJ1–J3, FoxK1–K2 | Sister to FoxJ2 and FoxJ3 | 39 | |
| 55 | Opisthokonta | Fungi | Blastocladiomycota | Allomyces macrogynus | 4.01858E-25 | FoxJ1 | forkhead box J3 | sister to FoxJ2–J3 | Sister to FoxP1–P4, FoxR1–R2 | 97 | |
| 56 | Opisthokonta | Choanozoa | Choanozoa | Monosiga brevicollis | 2.95E-29 | FoxJ1 | fgenesh2_pg.scaffold_5000329 | sister to FoxJ1–J3; FoxK1–K2 |
*
Only shown for Fungal Fox proteins.