Table 6. Comparision of different molecular features found in the leaf clusters EU, ED, NEU and NED.
EU | ED | NEU | NED | |
Average of absolute fold change | 12 | 3.06 | 20.16 | 3.09 |
mCIP-reads in promoter region * | 280 (18.6%) | 398 (20%) | 0 | 0 |
mCIP-reads in genic region | 913 (60%) | 1249 (63%) | 0 | 0 |
PMRD miRNA targets | 771 (51%) | 990 (50%) | 0 | 0 |
miRBase miRNA targets | 163 (10.8%) | 229 (11.5%) | 0 | 0 |
ChromDB annotated genes | 22 (25%) | 66 (75%) | 0 | 0 |
Unique GO terms among leaf clusters ∧ | 22 (48%) | 96 (73%) | 9 (25.7%) | 23 (49%) |
Genes with PPIs within the cluster (String-DB) | 296 (19.6%) | 697 (35%) | 129 (14.5%) | 389 (35%) |
TF genes (PlnTFDB) | 158 (10.5%) | 144 (7.2%) | 103 (11.6%) | 45 (4%) |
Pfam domain containing genes | 1254 (63.4%) | 1617 (81.8%) | 648 (73%) | 829 (75%) |
Metabolic pathways (RiceCyc) unique to the cluster among the leaf clusters | 35 (18%) | 28 (14%) | 11 (9%) | 14 (11%) |
Genes found in 5-azaC drought study among the identified protein spots § | 7 (12%) | 15 (25.8%) | 2 (3%) | 4 (6.8%) |
percentage is no. of genes with the feature over total no. of genes in the cluster;
percentage is over total no. of GO terms found in the cluster;
percentage over total identified protein spots.