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. 2012 Nov 8;7(11):e49331. doi: 10.1371/journal.pone.0049331

Table 6. Comparision of different molecular features found in the leaf clusters EU, ED, NEU and NED.

EU ED NEU NED
Average of absolute fold change 12 3.06 20.16 3.09
mCIP-reads in promoter region * 280 (18.6%) 398 (20%) 0 0
mCIP-reads in genic region 913 (60%) 1249 (63%) 0 0
PMRD miRNA targets 771 (51%) 990 (50%) 0 0
miRBase miRNA targets 163 (10.8%) 229 (11.5%) 0 0
ChromDB annotated genes 22 (25%) 66 (75%) 0 0
Unique GO terms among leaf clusters 22 (48%) 96 (73%) 9 (25.7%) 23 (49%)
Genes with PPIs within the cluster (String-DB) 296 (19.6%) 697 (35%) 129 (14.5%) 389 (35%)
TF genes (PlnTFDB) 158 (10.5%) 144 (7.2%) 103 (11.6%) 45 (4%)
Pfam domain containing genes 1254 (63.4%) 1617 (81.8%) 648 (73%) 829 (75%)
Metabolic pathways (RiceCyc) unique to the cluster among the leaf clusters 35 (18%) 28 (14%) 11 (9%) 14 (11%)
Genes found in 5-azaC drought study among the identified protein spots § 7 (12%) 15 (25.8%) 2 (3%) 4 (6.8%)
*

percentage is no. of genes with the feature over total no. of genes in the cluster;

percentage is over total no. of GO terms found in the cluster;

§

percentage over total identified protein spots.