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. 2012 Nov 8;7(11):e48460. doi: 10.1371/journal.pone.0048460

Figure 10. Comparison between the virtual bond-based PDB structure and correctly predicted structure with statistical potentials .

Figure 10

Inline graphic . The loops are (A) a hairpin loop from PDB structure 1IVS and (B) an internal loop from PDB structure 1JJ2, respectively. In both figures, the structures shown in brown (Inline graphic) and yellow (Inline graphic) stand for the PDB structure, and the ones shown in brown (Inline graphic) and purple (Inline graphic) represent the correctly predicted structure, which have the lowest potential and the minimal RMSD. The RMSD values are (A) 1.52 Å and (B) 1.96 Å, respectively. The atomic structures are illustrated with Pymol software (http://www.pymol.org/).