Table 2.
Post burn-in averages for parameters of Bayesian analyses. Abbreviations are: I = proportion of invariant sites, G = shape parameter of the gamma distribution of rate variation.
| Partition | Best-fit model | I | G | Rate Matrix | Base Frequency | ||||||||
| AC | AG | AT | CG | CT | GT | A | C | G | T | ||||
| 12S | GTR+G | – | 0.201 | 0.049 | 0.347 | 0.071 | 0.028 | 0.494 | 0.009 | 0.330 | 0.249 | 0.182 | 0.238 |
| 16S | SYM+I+G | 0.592 | 1.229 | 0.079 | 0.209 | 0.123 | 0.022 | 0.547 | 0.019 | – | – | – | – |
| CO1, 1st position | K80+I | – | – | – | – | – | – | – | – | – | – | – | |
| CO1, 2nd position | F81 | – | – | – | – | – | – | – | – | 0.168 | 0.269 | 0.155 | 0.408 |
| CO1, 3rd position | GTR+G | – | 2.972 | 0.024 | 0.651 | 0.027 | 0.027 | 0.236 | 0.035 | 0.272 | 0.324 | 0.093 | 0.310 |
| Control region | HKY+G | – | 0.367 | – | – | – | – | – | – | 0.399 | 0.183 | 0.085 | 0.333 |
| ND1, 1st position | HKY+G | – | 0.198 | – | – | – | – | – | – | 0.319 | 0.254 | 0.180 | 0.247 |
| ND1, 2nd position | HKY+I+G | 0.716 | 0.043 | – | – | – | – | – | – | 0.177 | 0.290 | 0.126 | 0.407 |
| ND1, 3rd position | GTR+G | – | 1.780 | 0.032 | 0.601 | 0.036 | 0.018 | 0.295 | 0.019 | 0.353 | 0.273 | 0.098 | 0.275 |
| POMC, 1st position | F81+G | – | 0.128 | – | – | – | – | – | – | 0.412 | 0.169 | 0.259 | 0.160 |
| POMC, 2nd position | F81 | – | – | – | – | – | – | – | – | 0.419 | 0.183 | 0.199 | 0.199 |
| POMC, 3rd position | HKY+I+G | 0.485 | 0.761 | – | – | – | – | – | – | 0.318 | 0.319 | 0.164 | 0.199 |