Table 2.
Spearman’s correlation between calculated gene expression and known gene model expression
| Dataset | Random | Unique | BowStrap |
|---|---|---|---|
|
50 M |
0.91 |
0.80 |
1.00 |
|
25 M |
0.90 |
0.80 |
1.00 |
|
10 M |
0.90 |
0.81 |
0.99 |
|
1 M |
0.89 |
0.81 |
0.96 |
| 0.5 M | 0.87 | 0.81 | 0.94 |
Spearman’s Rank Correlation was calculated between gene model expression values in synthetic read data and ‘Bowtie’-based methods for estimation of gene model expression levels. Three ‘Bowtie’-based methods for gene model expression were considered, using gene model expression values from synthetic RNAseq data of 50, 25, 10, 1, and 0.5 million total 46-mer sequence reads.