Table 1.

Comparison of detected peaks in serum and tissue

	Serum			Tissue
	m/z	adjusted p-value	FC	m/z	adjusted p-value	FC
CM10	10844	<0.0001	2.35	11753	<0.0001	4.11
	2773	<0.0001	0.57	4309	<0.0001	0.09
	3784	<0.0001	0.46	11855	<0.0001	3.48
	5963	<0.0001	1.76	12294	<0.0001	4.84
	2719	<0.0001	0.61	6652	<0.0001	2.39
	6048	<0.0001	1.60	6987	<0.0001	2.16
	6081	<0.0001	1.61	3139	<0.0001	0.21
	2796	<0.0001	0.58	9983	<0.0001	2.00
	5820	<0.0001	1.77	24815	<0.0001	1.99
	4296	<0.0001	0.51	5768	<0.0001	0.31
Q10	6685	<0.0001	0.64	3783	<0.0001	12.23
	3694	<0.0001	0.62	2774	<0.0001	0.11
	4288	<0.0001	0.70	4219	<0.0001	0.31
	4685	<0.0001	1.31	3958	<0.0001	2.85
	4796	0.0001	1.64	2923	<0.0001	2.85
	2909	0.0002	0.68	5460	<0.0001	0.19
	2858	0.0002	0.70	2944	0.0001	1.99
	1910	0.0005	0.69	4298	0.0007	0.36
	7994	0.0005	1.54	8198	0.0007	1.99
	4631	0.0012	1.24	5198	0.0009	1.80

List of ten m/z values most differentially expressed when comparing cancer with benign tumors in the serum and tissue experiments. Peaks listed are after pre-processing for CM10 and Q10 arrays. For each of the m/z values the adjusted p-value and fold change (FC: cancer versus benign) is given.