Table 1. Comparison of the decay of r2 with distance and recombination rate as estimated by different methods.
Parameter | True r2 | Direct observation r2 | Approx. maximum likelihood r2 |
Intercept | 0.662±0.008 (82.51) | 0.654±0.009 (75.729) | 0.609±0.007 (87.97) |
log(distance) | −0.0757±0.0007 (−104.4) | −0.0604±0.0008 (−77.37) | −0.0729±0.0006 (−116.6) |
recombination rate | −0.022±0.0012 (−18.07) | −0.018±0.0013 (−13.63) | −0.017±0.001 (−16.52) |
log(dist) x rec. rate | 0.00609±0.0007 (8.50) | 0.00661±0.0008 (8.575) | 0.00626±0.0006 (10.14) |
Results from a regression model that examines the how r2 decays as a function of physical distance (bp) and recombination rate (cm/Mb) and their interaction. Recombination rates were estimated from Fiston-Lavier et al. (2010) [33]. Values represent parameter estimates ± standard error and t statistics (in parentheses).