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. 2012 Nov 9;7(11):e48588. doi: 10.1371/journal.pone.0048588

Table 1. Comparison of the decay of r2 with distance and recombination rate as estimated by different methods.

Parameter True r2 Direct observation r2 Approx. maximum likelihood r2
Intercept 0.662±0.008 (82.51) 0.654±0.009 (75.729) 0.609±0.007 (87.97)
log(distance) −0.0757±0.0007 (−104.4) −0.0604±0.0008 (−77.37) −0.0729±0.0006 (−116.6)
recombination rate −0.022±0.0012 (−18.07) −0.018±0.0013 (−13.63) −0.017±0.001 (−16.52)
log(dist) x rec. rate 0.00609±0.0007 (8.50) 0.00661±0.0008 (8.575) 0.00626±0.0006 (10.14)

Results from a regression model that examines the how r2 decays as a function of physical distance (bp) and recombination rate (cm/Mb) and their interaction. Recombination rates were estimated from Fiston-Lavier et al. (2010) [33]. Values represent parameter estimates ± standard error and t statistics (in parentheses).