Table 4. List of Phylogenetic Profiles features computed in this study.

Name	Description/formula	References
nA, nB and nAB confidence		[36]
recall		[37]
lift		[38]
dice		[39]
pearson		[40]
GI		[41]
IQC		[42]
confidenceCentered 1		[43]
confidenceCentered 2		[43]
leastContradiction 1		[44]
leastContradiction 2		[44]
jaccard 1		[45]
jaccard 2		[45]
loevinger 1		[46]
loevinger 2		[46]
tec 1
tec 2
LAP 1		[47]
LAP 2		[47]
GAN 1		[48]
GAN 2		[48]
Zhang 1		[49]
Zhang 2		[49]
Pearl 1		[50]
Pearl 2		[50]