Table 3.
Proteins were identified from both gel-based proteomic experiments to reveal putative binding partners.
| IPI # | Gene name | Description | Number of peptides/spot volume in Control | Number of peptides/spot volume in LDIR treated | Mitochondrial proteins |
|---|---|---|---|---|---|
| IPI00217193 | ANKRD11 | Medulloblastoma antigen | 15 | 23 | |
| IPI00478834 | ARGLU1 | arginine and glutamate-rich protein 1 | 0 | 16 | |
| IPI00909493 | CBARA1 | Isoform 5 of calcium uptake protein 1 | 0 | 12 | |
| IPI00217357 | CCAR1 | Isoform 1 of cell division cycle and apoptosis | 0 | 33 | |
| IPI00216511 | CDC25B | M-phase inducer phosphotase | 0 | 15 | |
| IPI00301923 | CDK9 | Isoform 1 of cyclin dependent kinase 9 | 0 | 12 | |
| IPI00966223 | CDK11A | cyclin dependent kinase 11A | 6960000 | 10780000 | |
| IPI00784201 | CEP290 | Centrosomal protein of 290kDa | 21 | 32 | |
| IPI00815832 | CNTLN | Centlein | 19 | 97 | |
| IPI00376004 | COX8 | Cytochrome c oxidase subunit 8C | 0 | 4 | X |
| IPI00966243 | CYB5B | 0 | 1 | ||
| IPI00148820 | DTX3 | Protein deltex-3 | 0 | 4 | |
| IPI00181684 | ERC1 | ELKS/Rab6-interacting/CAST family member 1 | 26 | 79 | |
| IPI00003921 | EPB41 | Isoform 1 of Protein 4.1 | 0 | 1 | |
| IPI00006217 | GRIN2D | Glutamate receptor subunit | 0 | 1 | |
| IPI00029557 | GRPEL1 | GrpE protein homolog 1 | 0 | 1 | X |
| IPI00217469 | HIST1H1A | Histone H.1 | 0 | 10 | |
| IPI00102864 | HK2 | Hexokinase 2 | 0 | 13 | X |
| IPI00023029 | IDH1 | NADP specific isocitrate dehydrogenase | 0 | 1 | |
| IPI00031485 | MRP63 | Ribosomal protein 63 | 0 | 4 | X |
| IPI00414431 | NF2 | Isoform 1 of Merlin | 0 | 12 | |
| IPI00166807 | OXR1 | Isoform 2 of Oxidation resistance protein | 0 | 1 | X |
| IPI00954590 | PANK2 | Isoform 4 of Panthothenate kinase 2 | 0 | 1 | |
| IPI00915357 | PDK3 | Pyruvate dehydrogenase kinase isozyme 3 | 0 | 43 | X |
| IPI00554660 | PIPOX | Peroximal sarcosine oxidase | 0 | 12 | |
| IPI00789417 | PPP2R2A | Protein phosphotase 2 regulatory subunit A | 0 | 1 | |
| IPI00376974 | PPP2R2B | Protein phosphotase 2 regulatory subunit B | 0 | 11 | |
| IPI00305282 | RAD50 | DNA repair protein RAD50 | 0 | 82 | |
| IPI00783594 | RNPS1 | Isoform 3 of RNA-binding protein with serine rich domain 1 | 0 | 9 | |
| IPI00007004 | RRP15 | RRP15 like protein | 821100 | 1635000 | |
| IPI00022302 | SNX24 | sorting nexin 24 | 427900 | 859800 | |
| IPI00399264 | TPD52 | Tumor protein D54 | 0 | 12 | |
| IPI00018744 | TRADD | Tumor necrosis factor receptor | 0 | 1 |
This table shows the proteins with increased expression levels after LDIR treatment (cut off < 1.5 fold change) with enhanced interaction after LDIR.