Table 2.
RMSDs between 3IJE and 4G1M αVβ3-1TM structures.a
| Domain | Residues | 3IJE/4G1M non-H atoms (Å) | 3IJE/4G1M Cα atoms (Å) |
|---|---|---|---|
| PSI | 1-56+434-435 | 1.9 | 1.4 |
| Hybrid | 57-108+353-433 | 1.4 | 0.5 |
| βI | 109-352 | 1.3 | 0.7 |
| I-EGF1 | 436-472 | 1.9 | 1.3 |
| I-EGF2 | 473-522 | 2.9 | 1.4 |
| I-EGF3 | 523-559 | 1.2 | 0.6 |
| I-EGF4 | 560-600 | 1.5 | 0.8 |
| Ankle | 601-605 | 0.4 | 0.2 |
| β-tail | 606-690 | 1.3 | 0.7 |
| linker | 691-692 | 1.5 | 2.1 |
| β-propeller | 1-438 | 0.8 | 0.3 |
| Thigh | 439-594 | 1.3 | 0.6 |
| Calf-1 | 595-737 | 1.8 | 0.9 |
| Calf-2 | 738-954 | 1.5 | 1.1 |
| Linker | 955-959 | 2.0 | 1.6 |
| Overall | 1.4 | 0.8 |
a
RMSD was calculated using rms_cur command of PyMol.