Table 2.
Haplotypes |
Polymorphic sites |
|||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 |
8 |
9 |
1 |
1 |
1 |
1 |
2 |
2 |
2 |
3 |
4 |
5 |
6 |
6 |
7 |
7 |
8 |
|
1 |
4 |
0 |
0 |
0 |
4 |
6 |
1 |
5 |
5 |
6 |
0 |
8 |
1 |
2 |
7 |
8 |
1 |
|
1 | 2 | 6 | 3 | 6 | 1 | 6 | 4 | 7 | 6 | 7 | 3 | 3 | 9 | 9 | ||||
C1 |
- |
T |
T |
A |
* |
G |
- |
C |
- |
C |
A |
A |
G |
A |
A |
C |
- |
C |
C2 |
T |
• |
G |
• |
* |
• |
- |
• |
- |
• |
• |
• |
• |
C |
• |
• |
- |
• |
C3 |
- |
G |
• |
• |
* |
• |
- |
• |
- |
• |
• |
• |
• |
• |
• |
• |
- |
• |
C4 |
- |
• |
• |
• |
* |
• |
- |
• |
- |
• |
C |
• |
• |
• |
• |
• |
- |
• |
C5 |
- |
• |
• |
• |
* |
• |
- |
• |
- |
• |
• |
• |
• |
• |
• |
T |
- |
• |
C6 |
- |
• |
• |
• |
* |
• |
- |
• |
- |
T |
• |
• |
• |
• |
• |
• |
- |
• |
C7 |
- |
G |
• |
C |
* |
T |
- |
T |
- |
• |
• |
T |
• |
• |
• |
• |
- |
• |
C8 |
- |
• |
• |
• |
- |
• |
- |
• |
- |
• |
• |
• |
• |
• |
• |
• |
- |
• |
C9 |
- |
• |
G |
• |
* |
• |
A |
• |
- |
• |
• |
• |
T |
• |
C |
• |
- |
T |
C10 |
- |
G |
• |
C |
* |
• |
- |
• |
T |
• |
• |
• |
• |
• |
• |
• |
- |
• |
C11 |
- |
G |
• |
C |
* |
• |
- |
• |
- |
• |
• |
• |
• |
• |
• |
• |
- |
• |
C12 | - | • | G | • | * | • | - | • | - | • | • | • | • | • | • | • | # | • |
The number at the top indicates polymorphic sites. Indels are numbered according to the first position in which they occur. Dots represent nucleotide variants identical to the first sequence; - indicates absence; *and # denote two indels (AAATA and AAATATCTA).