Table 3.
Characteristics of the datasets used for cluster analysis
| Study | Accesion No. | Samples |
|---|---|---|
| Henderson et al., 2005 [23] |
ArrayExpress: E-MEXP-353 |
4 alveolar rhabdomyosarcoma, 5 chondroblastoma, 4 chondromyxoid fibroma, 7 chondrosarcoma, 4 chondroma, 3 dedifferentiated chondrosarcoma, 3 embryonal rhabdomyosarcoma, 5 Ewing tumor, 5 fibromatosis, 8 leiomyosarcoma, 3 lipoma, 4 malignant peripheral nerve sheath tumor, 10 monophasic synovial sarcoma, 7 myxoid liposarcoma, 4 neurofibroma, 11 osteosarcoma, 3 sarcoma, 4 schwannoma, 3 well-differentiated liposarcoma |
| Giordano et al., 2006 [21] |
ArrayExpress: E-GEOD-27155 |
4 anaplastic thyroid carcinoma, 10 follicular thyroid adenoma, 2 follicular thyroid carcinoma, 2 medullary thyroid carcinoma, 4 normal thyroid, 7 oncocytic thyroid adenoma, 8 oncocytic thyroid carcinoma, 13 papillary thyroid carcinoma |
| Freije et al., 2004 [20] |
GEO: GSE4412 |
6 astrocytoma, 10 glioblastoma, 5 anaplastic mixed oligo-astrocytoma, 10 anaplastic oligodendroglioma |
| Tirode et al., 2007 [29] |
ArrayExpress: E-GEOD-7007 |
11 Ewing tumor |
| Jones et al., 2005 [24] |
ArrayExpress: E-GEOD-15641 |
6 chromophobe RCC, 10 clear cell RCC, 10 oncocytoma, 10 papillary RCC, 8 transitional cell carcinoma |
| Lenburg et al., 2003 [25] |
ArrayExpress: E-GEOD-781 |
16 clear cell RCC, 1 normal kidney |
| De Preter et al., 2006 [12] |
ArrayExpress: E-MEXP-669 |
3 adrenal cortex, 3 neuroblast |
| Albino et al., 2008 [11] |
GEO: GSE7529 |
3 ganglioneuroblastoma, 6 ganglioneuroma |
| Boyault et al., 2007 [18] |
ArrayExpress: E-TABM-36 |
17 hepatocellular carcinoma, 3 hepatocellular adenoma |
| Parent et al., 2008 [27] |
ArrayÍExpress: E-GEOD-7142 |
4 hypothalamic hamartoma |
| Wong et al., 2005 [30] |
ArrayExpress: E-GEOD-12907 |
5 juvenile pilocytic astrocytoma, 3 normal cerebellar tissue, 2 normal fetal brain |
| Su et al., 2007 [28] |
ArrayExpress: E-GEOD-7670 |
1 large cell lung carcinoma, 14 lung adenocarcinoma, 12 normal lung |
| Monzon et al., 2009 [26] |
GEO: GSE12630 |
1 medullary thyroid carcinoma |
| Harlin et al., 2009 [22] |
ArrayExpress: E-GEOD-12627 |
13 melanoma |
| Salomon et al.,* |
ArrayExpress: E-GEOD-4780 |
5 meningioma |
| Corbin et al., 2009 [19] |
ArrayExpress: E-TABM-53 |
9 normal kidney, 11 Wilms' tumor |
| Mangiola et al.,* | ArrayExpress: E-GEOD-13276 | 3 normal white matter |
Asterisks mark studies where references were unavailable.