Table 3.
TEs families involved in pre-miRNAs
| |
|
MITE |
Other |
DNA |
LTR / |
CR1 / |
L1 |
SINE |
Other |
Others |
|---|---|---|---|---|---|---|---|---|---|---|
| mariner | MITEs | transposons | ERV | RTE | Non-LTR | |||||
| Frog |
TE-derived |
|
|
|
|
|
1 |
|
|
|
| |
mis-annotated |
|
|
|
|
|
|
|
|
|
| Human |
TE-derived |
11 |
11 |
8 |
20 |
22 |
18 |
40 |
3 |
5 |
| |
mis-annotated |
65 |
32 |
|
33 |
19 |
41 |
58 |
|
5 |
| Mouse |
TE-derived |
1 |
13 |
24 |
5 |
19 |
1 |
32 |
3 |
1 |
| |
mis-annotated |
|
5 |
2 |
17 |
7 |
11 |
28 |
|
7 |
| Nematode |
TE-derived |
|
1 |
1 |
1 |
|
|
|
|
1 |
| |
mis-annotated |
|
1 |
|
|
|
|
|
|
1 |
| Rat |
TE-derived |
1 |
2 |
1 |
|
10 |
|
7 |
|
|
| |
mis-annotated |
|
3 |
|
1 |
15 |
|
11 |
|
|
| Sea squirt |
TE-derived |
1 |
1 |
1 |
|
1 |
|
|
2 |
|
| mis-annotated | 1 | 1 |
TEs families involved in pre-miRNAs. The table gives the number of times TE families are identified by ncRNAclassifier in frog, human, mouse, nematode, rat and sea squirt pre-miRNAs. If a precursor contains two or more TE fragments, we counted each fragment.