Table 4.
Comparison of N transporter and cysteine peptidases (CPEP) sequence information from full-length cDNA* and RNA-seq data
|
Gene family |
Raw data |
After assembly |
Found in H35 |
New |
Overall |
||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| cDNA | RNA- seq | cDNA | RNA- seq | cDNA | RNA- seq | cDNA | Excl. | RNA- seq | Excl. | ||
|
AAT |
99 |
57 |
69 |
55 |
54 |
46 |
15 |
9 |
9 |
3 |
78 |
|
NRT1/PTR |
98 |
71 |
55 |
56 |
42 |
42 |
13 |
8 |
14 |
9 |
71 |
|
OPT |
27 |
22 |
19 |
20 |
14 |
14 |
9 |
8 |
6 |
5 |
29 |
| CPEP | 120 | 59 | 89 | 59 | 78 | 40 | 11 | 11 | 19 | 19 | 120 |
*Matsumoto et al. [40]; numbers of unigenes shown.