Table 2.
Pfmsp1 haplotype diversity revealed by sequencing
| Type | Estimated PCR fragment size (bp) |
# isolates sequenced |
Genotype (#) | Actual fragment size (bp) |
Reported identical sequences* |
Origin | Reference |
|---|---|---|---|---|---|---|---|
| K1 | PF-K1-1 (2) | 159 | AB276017 | Thailand | (Tanabe et al., 2007) | ||
|
|
|||||||
| 150 | 8 | PF-K1-2 (6) | 168 | M77730 | Thailand | (Jongwutiwes et al., 1992) | |
|
| |||||||
| 200 | 2 | PF-K1-3 (2) | 195 | GQ861443.1 | Myanmar | (Kang et al., 2010) | |
|
| |||||||
| MAD20 | PF-M1 (2) | 159 | AF509634 | Brazil | (Ferreira et al., 2003) | ||
|
|
|||||||
| 150 | 4 | PF-M2 (2) | 168 | EU032232.1 | Senegal | (Noranate et al., 2009) | |
|
| |||||||
| 200 | 16 | PF-M3 (2) | 186 | JF460927.1 | India | U | |
|
| |||||||
| PF-M4 (2) | 186 | EU445563.1 | Myanmar | U | |||
|
| |||||||
| PF-M5 (1) | 186 | EU445556.1 | Myanmar | U | |||
|
| |||||||
| PF-M6 (1) | 186 | U | |||||
|
| |||||||
| PF-M7 (9) | 195 | EU445557 | Myanmar | U | |||
|
| |||||||
| PF-M8 (1) | 195 | AF061141 | Tanzania | (Jiang et al., 2000) | |||
|
| |||||||
| RO33 | PF-R1 (6) | 159 | M32112 | Brazil | U | ||
|
|
|||||||
| 150 | 9 | PF-R2 (3) | 159 | AB276005.1 | Ghana | (Tanabe et al., 2007) | |
*
GenBank accession numbers; U – unpublished.