Table 5.
Description of MHC-DRB sequences from M. murinus observed or described in this study
| DRB allele | N amp. | N reads | Length (bp) | New? | Genbank accession number/nucleotide sequence |
|---|---|---|---|---|---|
| Mimu-DRB*18 | 101 | 15,821 | 163 | no | EU137062.1 |
| Mimu-DRB*19 | 72 | 11,907 | 163 | no | EU137063.1 |
| Mimu-DRB*20 | 48 | 6,932 | 163 | no | EU137064.1 |
| Mimu-DRB*21 | 31 | 3,693 | 163 | no | EU137065.1 |
| Mimu-DRB*22 | 48 | 5,619 | 163 | no | EU137066.1 |
| Mimu-DRB*23 | 33 | 4,730 | 163 | no | EU137067.1 |
| Mimu-DRB*25 | 4 | 1,080 | 163 | no | EU137069.1 |
| Mimu-DRB*26 | 3 | 289 | 163 | no | EU137070.1 |
| Mimu-DRB*27 | 39 | 9,123 | 163 | no | EU137071.1 |
| Mimu-DRB*28 | 93 | 13,558 | 163 | no | EU137072.1 |
| Mimu-DRB*29 | 46 | 13,279 | 163 | no | EU137073.1 |
| Mimu-DRB*30 | 66 | 10,127 | 163 | no | EU137074.1 |
| Mimu-DRB*31 | 5 | 753 | 163 | no | EU137075.1 |
| Mimu-DRB*32 | 48 | 15,472 | 163 | no | EU137076.1 |
| Mimu-DRB*33 | 148 | 16,221 | 163 | no | EU137077.1 |
| Mimu-DRB*34 | 35 | 5,850 | 163 | no | EU137078.1 |
| Mimu-DRB*36 | 63 | 14,297 | 163 | no | EU137080.1 |
| Mimu-DRB*37 | 17 | 4,546 | 163 | no | EU137081.1 |
| Mimu-DRB*38 | 30 | 7,888 | 163 | no | EU137082.1 |
| Mimu-DRB*39 | 54 | 7,208 | 163 | no | EU137083.1 |
| Mimu-DRB*40 | 40 | 5,528 | 163 | no | EU137084.1 |
| Mimu-DRB*41 | 47 | 2,470 | 163 | no | EU137085.1 |
| Mimu-DRB*42 | 15 | 4,288 | 163 | no | EU137086.1 |
| Mimu-DRB*43 | 14 | 3,296 | 163 | no | EU137087.1 |
| Mimu-DRB*44 | 29 | 7,933 | 163 | no | EU137088.1 |
| Mimu-DRB*45 | 60 | 15,058 | 163 | no | EU137089.1 |
| Mimu-DRB*46 | 39 | 8,776 | 163 | no | EU137090.1 |
| Mimu-DRB*47 | 15 | 2,450 | 163 | no | EU137091.1 |
| Mimu-DRB*48 | 8 | 1,322 | 163 | no | EU137092.1 |
| Mimu-DRB*49 | 1 | 184 | 163 | no | EU137093.1 |
| Mimu-DRB*50 | 20 | 3,000 | 163 | no | EU137094.1 |
| Mimu-DRB*51 | 10 | 1,624 | 163 | no | EU137095.1 |
| Mimu-DRB*52 | 1 | 329 | 163 | no | EU137096.1 |
| Mimu-DRB*53 | 2 | 97 | 163 | no | EU137097.1 |
| Mimu-DRB*54 | 13 | 1,275 | 163 | no | EU137098.1 |
| Mimu-DRB*55 | 35 | 3,652 | 163 | no | EU137099.1 |
| Mimu-DRB*56 | 11 | 1,510 | 163 | no | EU137100.1 |
| Mimu-DRB*59 | 17 | 1,839 | 163 | no | EU137103.1 |
| Mimu-DRB*60 | 20 | 4,035 | 163 | yes | HE801954 |
| Mimu-DRB*61 | 10 | 1,031 | 163 | yes | HE801955 |
| Mimu-DRB*62 | 8 | 923 | 163 | yes | HE801956 |
| Mimu-DRB*63 | 5 | 252 | 163 | yes | HE801957 |
| Mimu-DRB*64 | 4 | 591 | 163 | yes | HE801958 |
| Mimu-DRB*65 | 4 | 288 | 163 | yes | HE801959 |
| Mimu-DRB*66 | 4 | 336 | 163 | yes | HE801960 |
| Mimu-DRB*67 | 2 | 42 | 163 | yes | HE801961 |
| Mimu-DRB*68 | 2 | 397 | 163 | yes | HE801962 |
| Mimu-DRB*69 | 2 | 372 | 163 | yes | HE801963 |
| Mimu-DRB*70 | 2 | 231 | 163 | yes | HE801964 |
| Mimu-DRB*U071 | 1 | 9 | 163 | yes | CAGCTGGTGCGGTTCCTGGTGAGAGACATCTACAACC |
| GGGAGGAGATCGTGCGCTTTGACAGCGACGTGGGCGA | |||||
| GTTCCGGGCGGTGACGGAGCTGGGCCGGCCGGACGCC | |||||
| GAGTACTGGAACCGCCAGCAGGACTTCATGGAGCGGA | |||||
| CGCGGGCCGCGGTGG | |||||
| Mimu-DRB*U072 | 1 | 248 | 163 | yes | CAGCGGGTGCGGCTCCTGGACAGATACATCCACAACG |
| GGGAGGAGTTCGTGCGCTTCGACAGCGACGTGGGCGA | |||||
| GTTCCGGGCGGTGACGGAGCTGGGCCGGCCGGACGCC | |||||
| GAGTCCTGGAACCGCCAGCAGGACTTCCTGGAGCAGA | |||||
| GGCGGGCCGCGGTGG | |||||
| Mimu-DRB*U073 | 1 | 9 | 163 | yes | CAGCGGGTGCGGTACCTGCACAGACACATCTACAACC |
| GCCAGGAGATCGCGCGCTTCGACAGCGACGTGGGCGA | |||||
| GTACGGGGCGGTGACGGAGCTGGGCCGGCCGGACGCC | |||||
| GAGTACTGGAACCGCCAGCAGGACTTCATGGAGCGGA | |||||
| GGCGGGCGGAGGTAG | |||||
| Mimu-DRB*U074 | 1 | 125 | 163 | yes | CAGCGGGTGCGGTACCTGCACAGAGACATCTACAACC |
| GCGAGGAGATCGTGCGCTTCGACAGCGACGTGGGCGA | |||||
| GTACCGGGCGGTGACGGAGCTGGGCCGGCCGGACGCC | |||||
| GAGTACTGGAACAGCCAGCAGGACATCCTGGAGCAGA | |||||
| GGCGGGCCGCGGTGG | |||||
| Mimu-DRB*U075 | 1 | 9 | 163 | yes | CAGCGGGTGCGGTACCTGCACAGATATATCTACAACC |
| GCCAGGAGATCGCGCGCTTCGACAGCGACGTGGGCGA | |||||
| GTACCGGGCGGTGACGGAGCTGGGCCGGCCGGACGCC | |||||
| GAGTACTGGAACCGCCAGCAGGACATCCTGGAGCAGA | |||||
| AGCGGGCCGAGCTGG | |||||
| Mimu-DRB*U076 | 1 | 113 | 163 | yes | CAGCGGGTGCGGTTCCTGGAGAGATACGTCTACAACC |
| GCGAGGAGTACGCGCGCTTCGACAGCGACGTGGGCGA | |||||
| GTTCCGGGCGGTGACGGAGCTGGGCCGGCCGGACGCC | |||||
| GAGTACTGGAACAGCCAGCAGGACATCATGGAGGACG | |||||
| AGCGGGCCGCGGTGG | |||||
| Mimu-DRB*U077 | 1 | 165 | 163 | yes | CAGCGGGTGCGGTTCCTGGTGAGAGACATCTACAACC |
| GGGAGGAGATCGTGCGCTTCGACAGCGACGTGGGCGA | |||||
| GTTCCGGGCGGTGACGGAGCTGGGCCGGCCGGACGCC | |||||
| GAGTACTGGAACCGCCAGCAGGACTTCATGGAGCAGA | |||||
| CGCGGGCCGCGGTGG | |||||
| Mimu-DRB*U078 | 1 | 43 | 163 | yes | CAGCGGGTGCGGCTCCTGGACAGATACATCTCCAACG |
| GGGAGGAGACTGTGCGCTTCGACAGCGACGTGGGCGA | |||||
| GTTCCAGGCGGTGACGGAGCTGGGCCGGCCGGACGCC | |||||
| GAGTACTGGAACAGCCGGCAGGACATCATGGAGGACG | |||||
| AGCGGGCCGCGGTGG | |||||
| Mimu-DRB*U079 | 1 | 86 | 163 | yes | CAGCGGGTGCGGTACCTGCACAGATACATCTACAACC |
| GGGAGGAGTACGTGCGCTTCGACAGCGACGTGGGCGA | |||||
| GTACCGGGCGGTGACGCCGCTGGGCCGGCCGGACGCC | |||||
| GAGTACTGGAACAGCCAGCAGGACCTCCTGGAGCGGA | |||||
| GGCGGGCCAAGGTGG | |||||
| Mimu-DRB*U080 | 1 | 110 | 163 | yes | CAGCGGGTGCGGTACCTGGAGAGACACATCTACAACC |
| GCGAGGAGATCGTGCGCTTCGACAGCGACGTGGGCGA | |||||
| GTTCCGGGCCGTGACGGAGCTGGGCCGGCCGAGCGCC | |||||
| GAGTACTTGAACCGCCAGCAGGACTACATGGAGCAGA | |||||
| CGCGGGCCTTGGTGG | |||||
| Mimu-DRB*U081 | 1 | 583 | 163 | yes | CAGCGGGTGCGGTTCCTGGAGAGACACATCTACAACC |
| GCGAGGAGATCCTGCGCTTCGACAGCGACGTGGGCGA | |||||
| GTACCGGGCCGTGACGGAGCTGGGCCGGCCGGAAGCC | |||||
| GAGTACTGGAACCGCCAGCAGGACATCCTGGAGCAGA | |||||
| CGCGGGCGGAGGTGG | |||||
| Mimu-DRB*U082 | 1 | 153 | 163 | yes | CAGCGGGTGCGGTTCCTGGTGAGAGTCATCTACAACC |
| GCGAGGAGTACGTGCGCTACGACAGCGACGTGGGCGA | |||||
| GTACCGGGCGGTGACGGAGCTGGGCCGGCCGGACGCC | |||||
| GAGTACTGGAACCGCCAGCAGGACCACCTGGAGCAGA | |||||
| GGCGGGCGGAGGTGG |
The number of independent amplicons (N amp.) from which each sequence was retrieved, as well as the total number of reads (across runs and amplicons) for each sequence is given. The nucleotide sequence of new sequences retrieved from only one individual is shown in this table; such sequences were not submitted to public repository to ensure the storage of high quality sequences in such databases