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. Author manuscript; available in PMC: 2012 Nov 13.
Published in final edited form as: Biopolymers. 2007 Feb 5;85(2):115–130. doi: 10.1002/bip.20627

Table I.

DNA Looping in Prokaryotic and Eukaryotic Transcriptional Regulation

Molecule or locus Mode of action Wild type loop lengths (bp)
Lac repressor83 Repression 92, 401
AraC85 Repression and activation 210
Gal repressor85 Repression 115
Deo repressor85 Repression 270, 599, 869
Nag repressor86 Repression 93
NtrC87 Activation 110–140
λ repressor84,88 Repression and activation ~2400
XylR89 Activation ~150
PapI87,90 Activation ~100
β-globin locus91,92 Activation 40,000–60,000
RXR93 Activation ~0–500
SpGCF194 Activation, domain intercommunication ~0–2500
HSTF95 Activation 23
p5396 Repression and activation 50–3000
Sp19799 Activation ~1,800
c-Myb and C/EBP100 Activation ~80

Loop lengths and mechanisms of action of some of the best known looping systems in bacteria and eukaryotes. Note that these loop lengths suggest tightly bent configurations since the in vitro measured persistence length is 150 bp.