Table I.
Molecule or locus | Mode of action | Wild type loop lengths (bp) |
---|---|---|
Lac repressor83 | Repression | 92, 401 |
AraC85 | Repression and activation | 210 |
Gal repressor85 | Repression | 115 |
Deo repressor85 | Repression | 270, 599, 869 |
Nag repressor86 | Repression | 93 |
NtrC87 | Activation | 110–140 |
λ repressor84,88 | Repression and activation | ~2400 |
XylR89 | Activation | ~150 |
PapI87,90 | Activation | ~100 |
β-globin locus91,92 | Activation | 40,000–60,000 |
RXR93 | Activation | ~0–500 |
SpGCF194 | Activation, domain intercommunication | ~0–2500 |
HSTF95 | Activation | 23 |
p5396 | Repression and activation | 50–3000 |
Sp197–99 | Activation | ~1,800 |
c-Myb and C/EBP100 | Activation | ~80 |
Loop lengths and mechanisms of action of some of the best known looping systems in bacteria and eukaryotes. Note that these loop lengths suggest tightly bent configurations since the in vitro measured persistence length is 150 bp.