Table 5.

Sequence variation at the six loci among strains of the B-collection (88 strains)

Locus	No. of sitesa	GC%	Sb	Hapc	Hdd	θπe	θWf	Tajima's Dg	Fu & Li's Dg	Fu's Fg
atpD	561	0.681	43	17	0.794	0.01153	0.01589	−0.87776	1.63438*	0.76536
dnaK	576	0.693	29	20	0.841	0.0059	0.00997	−1.25588	−1.70693	−1.8353
gyrB	744	0.661	95	18	0.825	0.01785	0.02742	−1.16528	−0.04185	−0.60965
ppk	564	0.688	53	21	0.888	0.01721	0.01896	−0.29895	−0.03642	1.028
recA	594	0.7	64	17	0.752	0.01786	0.02501	−0.94167	−0.14782	−0.5668
rpoB	516	0.651	29	16	0.779	0.00624	0.01152	−1.41461	0.96484	0.06075
Concath	3.594	0.679	313	48	0.972	0.01313	0.01872	−1.0211	0.1261	0.855

^aData represent the number of analyzed sites.

^bS, number of polymorphic sites.

^cHap, number of haplotypes.

^dHd, level of haplotype diversity (54).

^eθ_π, level of nucleotide diversity (54).

^fθ_W, level of nucleotide diversity from S (78).

^gData represent the results of neutrality tests performed using the method of Tajima (73) and Fu and Li (24) (Tajima's D, Fu and Li's D*, and Fu's F*) and associated P values (*, P < 0.05).

^hConcat, data set of concatenated sequences.