Table 1.
cdGMP-regulated genes in F. novicida
| Gene | Annotation of gene product | Fold change | Presence in strain Schuh S4 |
|---|---|---|---|
| Upregulated genes | |||
| FTN0010 | Phage terminase | +2.091 | Missing |
| FTN0286 | Transposase | +2.047 | Missing |
| FTN0324 | Anti-sigma factor antagonist | +2.030 | FTT1612 |
| FTN0627 | ChiA (chitinase) | +2.238 | Functional ChiA (44- and 66-aa deletions) |
| FTN0793 | Hypothetical protein | +2.145 | FTT1078; 78-aa C-terminal truncation |
| FTN0879 | Zinc-iron permease | +3.689 | Pseudogene |
| FTN0880 | Cobalamin synthase | +4.379 | CobS |
| FTN1328 | Trehalase | +2.298 | Pseudogene |
| FTN1485 | Chitin-binding protein | +3.438 | Split: FTT1576-FTT1577 |
| FTN1744 | ChiB (chitinase) | +2.983 | ChiB with 124-aa N-terminal truncation |
| FTN1758 | Hypothetical protein | +2.407 | Missing |
| Downregulated genes | |||
| FTN0313 | Acetyltransferase | −2.234 | Pseudogene |
| FTN0714 | Conserved hypothetical protein | −3.299 | Missing |
| FTN0715 | Conserved hypothetical protein | −2.472 | FTT0742; 594-aa C-terminal truncation |
| FTN1021 | Conserved hypothetical protein | −2.423 | FTT0662; 43-aa C-terminal truncation |
| FTN1101 | Lipoprotein, unknown function | −2.721 | Missing |
| FTN1102 | Hypothetical protein | −2.070 | Missing |
| FTN1103 | Conserved hypothetical protein | −2.438 | Missing |
| FTN1104 | Hypothetical protein | −2.293 | FTT1122 (only N-terminal 66 aa) |