Table 2.
The top 30 predictions of imprinted genes based on mRNA-Seq data from Group I and Group II samples
| SNP(rs#) | Chr | Location | Str | Posterior | GeneID | Symbol | SS | FDR | Group |
|---|---|---|---|---|---|---|---|---|---|
| 11538691 |
chr17 |
4789783 |
+ |
1 |
5216 |
PFN1 |
9 |
0 |
I |
| 178412 |
chr7 |
73173272 |
- |
1 |
3984 |
LIMK1 |
8 |
0 |
I |
| 17094371 |
chr14 |
57677831 |
+ |
1 |
145407 |
C14orf37 |
9 |
0 |
I |
| 2596331 |
chr1 |
143820905 |
- |
0.999996 |
9554 |
SEC22B |
7 |
0.26 |
I |
| 8110904 |
chr19 |
47723208 |
+ |
0.999995 |
634 |
CEACAM1 |
4 |
0 |
I |
| 11555395 |
chr17 |
67629054 |
+ |
0.999993 |
6662 |
SOX9 |
5 |
0 |
I |
| 4015375 |
chr7 |
89628110 |
+ |
0.99997 |
26872 |
STEAP1 |
6 |
0 |
I |
| 4015375 |
chr7 |
89628110 |
+ |
0.99997 |
256227 |
MGC87042 |
6 |
0 |
I |
| 10208923 |
chr2 |
141157767 |
+ |
0.9998 |
53353 |
LRP1B |
5 |
0 |
I |
| 9807047 |
chr17 |
46229893 |
+ |
0.999751 |
731414 |
LOC731414 |
7 |
0 |
I |
| 584959 |
chr3 |
61703763 |
+ |
0.995669 |
100128936 |
RPL10AP6 |
9 |
0.052 |
I |
| 10800864 |
chr1 |
201003241 |
+ |
0.995398 |
10765 |
KDM5B |
9 |
0.052 |
I |
| 10306 |
chr10 |
74437407 |
- |
0.993645 |
5033 |
P4HA1 |
4 |
0 |
I |
| 2009646 |
chr5 |
108148856 |
+ |
0.989758 |
2241 |
FER |
6 |
0 |
I |
| 2009646 |
chr5 |
108148856 |
+ |
0.989758 |
643534 |
LOC643534 |
6 |
0 |
I |
| 178412 |
chr7 |
73173272 |
- |
1 |
3984 |
LIMK1 |
11 |
0.098 |
II |
| 11538691 |
chr17 |
4789783 |
+ |
1 |
5216 |
PFN1 |
20 |
0.023 |
II |
| 11541557 |
chr1 |
226352225 |
+ |
1 |
375 |
ARF1 |
9 |
0 |
II |
| 17492855 |
chr2 |
158989711 |
+ |
0.999999 |
130940 |
CCDC148 |
18 |
0.014 |
II |
| 2352731 |
chr3 |
144378737 |
+ |
0.999995 |
5089 |
PBX2 |
10 |
0.072 |
II |
| 1065453 |
chr7 |
99755171 |
- |
0.999992 |
441272 |
SPDYE3 |
5 |
0 |
II |
| 11066116 |
chr12 |
110915447 |
+ |
0.999989 |
89894 |
TMEM116 |
8 |
0 |
II |
| 2499 |
chr6 |
30021520 |
- |
0.999982 |
3105 |
HLA-A |
7 |
0.26 |
II |
| 3093976 |
chr6 |
31610839 |
- |
0.99993 |
7919 |
BAT1 |
8 |
0.12 |
II |
| 705 |
chr15 |
22770604 |
+ |
0.999919 |
6638 |
SNRPN |
20 |
0.023 |
II |
| 705 |
chr15 |
22770604 |
+ |
0.999919 |
8926 |
SNURF |
20 |
0.023 |
II |
| 3132453 |
chr6 |
31712022 |
- |
0.999913 |
7916 |
BAT2 |
4 |
0 |
II |
| 1051470 |
chr12 |
117067614 |
+ |
0.999874 |
5037 |
PEBP1 |
14 |
0.051 |
II |
| 1364261 |
chr16 |
70597171 |
- |
0.999859 |
100130263 |
LOC100130263 |
8 |
0 |
II |
| 11160608 | chr14 | 100382845 | + | 0.999796 | 100130955 | LOC100130955 | 20 | 0.023 | II |
Abbreviations: rs#-SNP identification number, Chr-chromosome, Str-strand, SS-sample size.