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. 2012 Nov 14;7(11):e49463. doi: 10.1371/journal.pone.0049463

Table 4. Summary of miRNA primers used in real-time RT-PCR.

Primer Sequences (5′→3′) Length (nt) GC (%) Tm
U6 CAAGGATGACACGCAAATTCG 21 47.6 69
bta-miR-15b CGTAGCAGCACATCATGGTTTACA 24 45.8 72
bta-miR-107 GAGCAGCATTGTACAGGGCTATC 23 52.2 73
bta-miR-30b-5p GCCGAAACATCCTACACTCAGCT 23 52.2 73
bta-miR-214 AGCAGGCACAGACAGGCAGT 20 60.0 72
bta-miR-193a-5p GTCTTTGCGGGCGAGATGA 19 57.9 69
bta-miR-339b CCATATCTGTCCTCCAGGAGCTC 23 56.5 75
bta-miR-375 TTCGTTCGGCTCGCGTGA 18 61.1 69
bta-miR-487b GCAATCGTACAGGGTCATCCAC 22 54.5 70
bta-miR-339b CCATATCTGTCCTCCAGGAGCTC 23 56.5 75
bta-miR-100 AACCCGTAGATCCGAACTTGTG 22 50.0 71
Novel_3 TACGAGGACCTCCAGAACGACC 22 59.1 65
Novel_5 CCAGGCTAGGAGAAATGATTGG 22 50.0 62
Novel_7 CCCAAACCAGTTGTGCCTGTAG 22 54.6 64
Novel_10 AGCGCAAATGAACGTTTTGG 20 45.0 63
Novel_16 CCAGGGATGTAGCTCCTAGTGC 22 59.1 63
Novel_24 TGGGAGTCGCTGAGAGGATGGA 22 60.9 69
Novel_25 CAGGGAGAAGGTGAGCAGAGGA 22 59.1 65
Novel_27 TGTGAGAGAAGAGGACGCCTGG 22 59.1 66
Novel_32 ATATATCCAGGGGACGCCGTT 21 52.4 64
Novel_33 CCGCCGGTAAAAAATTGATTTGACT 25 40.0 67
Novel_34 GCGTCAAGTGATGGAGAAGATGA 23 47.8 64
Novel_35 AATTCCGGTCGCTGTGCTCTCG 22 59.1 70
Novel_37 GCGAACCTGAGCAAACTTTTT 21 42.9 61
Novel_38 CACTGATTGGGGTAGATGTGAGA 23 47.8 62
Novel_39 CAGCAACTAAAGATCCCTCAGG 22 50.0 60
Novel_41 ATAGAGAGGGATGGGCTGGG 20 60.0 63
Novel_42 CGCTGAACAAACTTTTTGGCCA 22 45.5 66
Novel_43 TGCCAAGCCCACGTTCAAAGG 21 57.1 70
Novel_44 TGGGGAAGCGCAGGAAACAGT 21 57.1 68
Novel_45 TGAGTTAAAGGAAAAGGAAAGT 22 31.8 54
Novel_46 AATGTACTTGTGGAGTTGGAG 21 42.9 54
Novel_48 TGGACAACTGAAGCTAGCACAG 22 50.0 61
Novel_50 ATAGAGCCCCGGTAGACTGT 20 55.0 58