Table 3. Novel miRNAs identified from deep sequencing data.
| miRNA | Sequence | Length | +N | −N | Fold(log2)(−N/+N) | Target | Target Annotation |
| miRN01 | TGAGAGAAGGAATTAGATTCA | 21 | 22 | 18 | −0.3 | At3g60830 | Unknown |
| At4g28760 | |||||||
| miRN02 | CTTGAGGAGGTGTATAGAGGTTA | 23 | 6 | 8 | 0.4 | - | |
| miRN03 | TTTTACTGCTACTTGTGTTCC | 21 | 9 | 13 | 0.5 | At3g09010 | Protein kinase |
| miRN04 | ATACTGAAGATGAAACTAGCT | 21 | 6 | 6 | 0 | At1g75280 | Isoflavone reductase |
| miRN05 | TAGTGTTTTTTATGGATCGTCTA | 23 | 12 | 28 | 1.2 | - | |
| miRN06 | AAAGATGCAGATCATATGTCC | 21 | 17 | 38 | 1.2 | - | |
| miRN07 | TGGCGAGGATGAATAATGCTAA | 22 | 28 | 153 | 2.4 | - | |
| miRN08 | TTCGGTTCGGTTCGGTTCGGTTA | 23 | 14 | 27 | 0.9 | At1g74930 | Chloroplast function |
| At1g67623 | |||||||
| At1g26520 | |||||||
| miRN09 | TTGGTAGTGGATAAGGGGGCA | 21 | 71 | 226 | 1.7 | At1g80740 | Chromomethylase 1 |
| miRN10 | TACAGAGTAGTCAAGCATGACC | 22 | 21 | 26 | 0.3 | - | |
| miRN11 | TTGTCGATGTTTTTTTTACGGTA | 23 | 13 | 13 | 0 | - | |
| miRN12 | TGGGGTATTGTTGGAGTTTATTA | 23 | 9 | 7 | −0.4 | - | |
| miRN13 | TTGACTGCATTAACTTGATCG | 21 | 24 | 9 | −1.4 | At1g26450 | Carbohydrate-binding protein |
| miRN14 | TGACATCCAGATAGAAGCTTT | 21 | 1145 | 82 | −3.8 | At3g59210 | F-box family protein |
| At1g58310 | |||||||
| At5g41840 | |||||||
| At3g59230 | |||||||
| At4g00320 | |||||||
| At3g59200 | |||||||
| miRN15 | AGACACGGAGAAATCGGGAGATC | 23 | 9 | 13 | 0.5 | - | |
| miRN16 | ACAGTGGTCATCTGGTGGGCT | 21 | 8 | 22 | 1.5 | - | |
| miRN17 | AAAGAATCGTTGTTCAAGCTA | 21 | 8 | 36 | 2.2 | - | |
| miRN18 | TTTGAATTTTTAGAGCATGTCCA | 23 | 12 | 11 | −0.1 | - | |
| miRN19 | TTAGTCGAATATGTTTTGGTTTA | 23 | 5 | 6 | 0.3 | - | |
| miRN20 | TACAAGGAGTCAAGCATGACC | 21 | 14 | 81 | 2.5 | At3g24610 | F-box family protein |
Boldface letters indicate that the predicted target cleavages were identified from Arabidopsis degradome data.
“-” Indicates that no target was predicted. The miRNAs with a relative change ratio greater than 2 were underlined.