Table 1. Diversity metrics of rarified bacterial and archaeal 16S rRNA 454-pyrotag sequences.
Sample | Chao1a | Chao1 (lower bound)b | Chao1 (upper bound)b | ACEc | Simpsond | Singletonse | Doubletonse |
---|---|---|---|---|---|---|---|
Distal plume | 394.53 | 273.32 | 628.27 | 443.80 | 0.58 | 91.78 | 15.96 |
Proximal plume | 806.71 | 626.34 | 1093.50 | 911.07 | 0.57 | 198.93 | 38.47 |
Uncontaminated | 1722.58 | 1507.22 | 2007.66 | 1849.08 | 0.96 | 481.80 | 126.04 |
Species richness (Chao, 1984).
Confidence intervals (Chao et al., 1992).
Species richness (Chao et al., 2000).
Species diversity (Simpson, 1949).
Singeltons are species with only one individual. Doubletons are species with only two individuals (Colwell and Coddington, 1994).