Table II.
Gene/gene region | dbSNP identifier | Main effect P valuea | Pinteractionb | ||
Adenoma | |||||
B[a]P | |||||
GSTM3c | rs15864 | 0.75 | 0.07 | ||
UGT1A locus | rs1105880 | 0.96 | 0.04 | ||
UGT1A locus | rs12623271 | 0.44 | 0.04 | ||
UGT1A locus | rs10168416 | 0.83 | 0.07 | ||
PhIP | |||||
UGT1A locus | rs871514 | 0.06 | 0.09 | ||
UGT1A locus | rs28969701 | 0.40 | 0.08 | ||
UGT1A locus | rs2018985 | 0.06 | 0.05 | ||
UGT1A locus | rs10197460 | 0.37 | 0.09 | ||
AHR | rs4236290 | 0.63 | 0.05 | ||
EPHX1d | rs2671272 | 0.34 | 0.08 | ||
MeIQx | |||||
UGT1A locus | rs7571337 | 0.62 | 0.07 | ||
NAT1 | rs6586714 | 0.64 | 0.001* | ||
DiMeiQx | |||||
CYP2C9 | rs9332197 | 0.47 | 0.09 | ||
EPHX1d | rs2671272 | 0.34 | 0.05 | ||
EPHX1e | rs868966 | 0.27 | 0.03 | ||
Combined nitrate and nitrite | |||||
— | — | — | — | ||
Cancer | |||||
B[a]P | |||||
AHR | rs2066853 | 0.21 | 0.07 | ||
UGT1A locus | rs6714486 | 0.50 | 0.06 | ||
UGT1A locus | rs17868299 | 0.67 | 0.05 | ||
PhIP | |||||
— | — | — | — | ||
MeIQx | |||||
UGT1A locus | rs2011404 | 0.30 | 0.08 | ||
CYP2E1 | rs915908 | 0.63 | 0.05 | ||
DiMeiQx | |||||
UGT1A locus | rs6717546 | 0.52 | 0.04 | ||
Combined nitrate and nitrite | |||||
UGT1A locus | rs12466997 | 0.17 | 0.08 |
aP value is for main effect of SNP on colorectal adenoma and cancer risk (P-values not corrected for multiple testing). Adjusted for age, sex and ethnicity and assuming a log-additive model.
bP value is for a test for interaction using the likelihood ratio test comparing models with and without the cross-product of SNP for the given gene and the median of the categories of meat mutagen intake. P-values not corrected for multiple testing. Adjusted for age, sex and ethnicity and assuming a dominant model.
cSNP located within 10kb downstream of EPS8L3.
dSNP located within 10kb downstream of TMEM63A.
eSNP located within 10kb upstream of LEFTY3.
*statistically significant at P<0.05 after adjustment for multiple testing