Figure 5. Schematic partitioning of the 39,099 variant positions between intra- and inter-genotypic SNPs.

Variant positions are counted among contigs covered by the 2 genotypes and with at least 6 reads of both. The blue and brown bars symbolize the A_T and D_T sub-genome co-assembled homoeo-copies. Genotypes are symbolized in plain (G. hirsutum) and dotted (G. barbadense) lines.