Table 3.
Distribution of χ2 test scores in SNPs selected for individual genotyping.
| All SNPs | Conforminga | Non-conformingb | |
|---|---|---|---|
| Selected SNPs | 284 | 142 | 142 |
| Number meeting quality criteria | 263 | 135 | 128 |
| p < 0.04c | 90 | 59 | 31 |
| p < 0.01c | 41 | 24 | 17 |
a SNPs selected based on corroborating evidence from the haplotype-fitting procedure.
b SNPs selected based on a large but without supporting haplotype information.
c SNPs meeting this threshold in a χ2 test of allelic association with the HDL phenotype.
SNPs, single nucleotide polymorphisms.