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. 2012 Nov 15;2012:bas043. doi: 10.1093/database/bas043

Table 3.

Commonalities and differences in the curation workflow stages

Curation stage Commonalities Differences
Source collection
  • PubMed search (abstracts)

  • Full-text articles (pdf)

  • Number of papers to be curated

  • Acceptance of sources outside of PubMed (e.g. author submission)

Paper selection (triage)
  • Manual process by humans

  • Primarily based on abstract

  • Assignment of curation priorities

  • Identification of genes/proteins

  • Database-specific selection criteria (e.g. species, gene/function, novelty)

  • Identification of additional bio-entities (e.g. anatomy, cell type)

Full curation
  • Gene (function) centric

  • Use of full text

  • Use of controlled vocabularies and ontologies

  • Identification of experimental evidence

  • Contacting authors when needed

  • Annotating database/species-specific entities and relationships

  • Annotating images (Xenbase)