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. Author manuscript; available in PMC: 2012 Nov 18.
Published in final edited form as: Nat Protoc. 2012 Jul 19;7(8):1523–1533. doi: 10.1038/nprot.2012.077

TABLE 4.

Output file names and description of contents.

File name Description
fitout_glblparams.txt Best-fit global parameters and s.d. (σ) for each parameter equal to 68% confidence interval
fitted_R2dark1.txt, fitted_R2dark2.txt Residue-specific R2 and σ (R2) (s−1) of the dark state(s). Both are computed for fit type 3–7, and only the R2 in the single dark state is computed for fit type 1
fitted_R2tethered.txt Residue-specific R2 for tethered state. Computed for fit type 0 and 1
fitted_K3.txt Residue-specific equilibrium constant K3 = [direct-contact]/[tethered]. Computed for fit type 0 or 1
plotres_[X].png Plot of the DEST data as a function of saturation pulse offset frequency for residue [X], in .png image file format
plotvarnum_[Y].png Plot of residue-specific parameter [Y] as a function of residue. Varnum 1 and 2 correspond to R2tethered and K3, respectively, for fit types 0 and 1, and to R2 in dark states 1 and 2, R2dark(1) and R2dark(2), respectively, for fit types 2 to 7
plot_deltaR2.png Plot of ΔR2 experimental versus that computed from best-fit model, in .png image file format
exptDEST_res[X].txt Experimental input DEST data for residue [X], formatted for ease of plotting. Format: saturation offset, relative peak intensity as a function of offset and saturation field (Hz)
fitDEST_res[X].txt Best-fit model DEST data for residue [X], formatted for ease of plotting. Format: saturation offset, relative peak intensity as a function of offset and saturation field (Hz)