Table 2. Peaks with low Mann-Whitney U test and low local FDR.

m/z	laser energy	note	ENU mean	ENU sem	Ctl mean	Ctl sem	p value	local FDR
6909	med	z = 2 for 13840	9.97	0.28	8.18	0.25	0.000008	0.0014
6859	med	z = 2 for 13725	14.07	0.61	10.61	0.43	0.000029	0.0025
22054	med	z = 3 for 66110	1.00	0.09	0.55	0.05	0.000038	0.0025
66110	high	Albumin	17.04	0.82	13.08	0.52	0.000084	0.0054
46643	high		0.24	0.04	0.46	0.04	0.000105	0.0054
13725	med	transthyretin (Cys-)	74.09	2.76	58.45	2.31	0.000131	0.0054
3493	low	α1-macroglobulin fragment	12.17	2.28	6.51	1.66	0.000201	0.0078
27410	med	dimer of 13725	0.59	0.03	0.45	0.03	0.000273	0.0078
22893	high	PGD2S	17.94	1.09	22.97	0.84	0.000334	0.0078
21365	high		3.39	0.17	4.20	0.13	0.000369	0.0078
6823	med	z = 2 for 13670	9.85	0.40	7.61	0.37	0.000407	0.0078
33109	high	z = 2 for 66110	5.24	0.22	4.14	0.16	0.000407	0.0078
36781	high		0.74	0.07	1.10	0.06	0.000449	0.0078
14120	med		24.90	1.19	31.01	1.57	0.000658	0.0161
110080	high		0.03	0.00	0.04	0.00	0.000722	0.0161
13670	med	? transthyretin (sulfonated)	49.70	1.99	38.96	2.08	0.000792	0.0161
131938	high	dimer of 66110	0.76	0.09	0.44	0.04	0.000868	0.0161
3504	low		2.75	0.31	1.80	0.29	0.001041	0.0161
38453	high		0.65	0.04	0.83	0.03	0.001041	0.0161
21593	high		3.30	0.17	4.04	0.12	0.001138	0.0161
6795	med	z = 2 for 13601	16.26	0.47	13.89	0.45	0.001244	0.0161
13913	med	transthyretin (glutathionylated)	122.75	5.28	143.62	6.35	0.001358	0.0161
27538	med		0.81	0.03	0.68	0.03	0.001482	0.0161
2887	low		2.38	0.20	1.47	0.13	0.001482	0.0161
6865	low	z = 2 for 13725	11.02	0.73	8.53	0.58	0.001760	0.0478
13788	med	transthyretin (-Cys-Gly)	51.29	1.34	44.48	1.64	0.002265	0.0868
13601	med	transthyretin (unmodified)	80.66	2.00	70.86	2.33	0.003398	0.1167

Peaks in bold type are z = 1. Peaks in italics are aliases (z = 2 or 3, or dimers) of the indicated protein.