Table 4.

Linkage disequilibrium analysis at the allelic level

		2DL2/3			3DP1		2DL4						3DL1/S1			2DS4
		0	2	3	Δex2	v	001	005	006	008	011	0	0	L1	S1	0	Δ	FL
2DL2/3	0				−0.140	−1.000	−1.000	0.582	−1.000	−1.000	−1.000	0.491	0.491	−1.000	0.573	1.000	−1.000	−1.000
	2				−0.962	1.000	0.103	0.155	0.239	−0.096	−0.650	0.239	0.239	−0.203	0.181	0.163	−0.228	0.155
	3				1.000	−1.000	−0.079	−0.219	−0.219	0.138	0.666	−1.000	−1.000	0.294	−0.239	−0.258	0.264	−0.133
3DP1	Δex2	−0.140	−0.962	1.000			−0.107	0.382	1.000	−0.085	0.644	−0.355	−0.355	−0.152	0.315	0.333	0.040	−0.140
	v	−1.000	1.000	−1.000			0.124	−0.349	−1.000	0.124	−0.625	−1.000	−1.000	0.331	−0.279	−0.414	−0.036	0.152
2DL4	001	−1.000	0.103	−0.079	−0.107	0.124							−1.000	0.891	−0.883	−1.000	−0.821	0.964
	005	0.582	0.155	−0.219	0.382	−0.349							−1.000	−1.000	1.000	1.000	−1.000	−1.000
	006	−1.000	0.239	−0.219	1.000	−1.000							−1.000	1.000	−1.000	−1.000	1.000	−1.000
	008	−1.000	−0.096	0.138	−0.085	0.124							−1.000	1.000	−1.000	−1.000	1.000	−1.000
	011	−1.000	−0.650	0.666	0.644	−0.625							−1.000	0.830	−0.817	−0.822	0.813	−0.802
	0	0.491	0.239	−1.000	−0.355	−1.000							1.000	−1.000	−1.000	1.000	−1.000	−1.000
3DL1/S1	0	0.491	0.239	−1.000	−0.355	−1.000	−1.000	−1.000	−1.000	−1.000	−1.000	1.000				1.000	−1.000	−1.000
	L1	−1.000	−0.203	0.294	−0.152	0.331	0.891	−1.000	1.000	1.000	0.830	−1.000				−1.000	0.958	0.882
	S1	0.573	0.181	−0.239	0.315	−0.279	−0.883	1.000	−1.000	−1.000	−0.817	−1.000				0.967	−1.000	−0.873
2DS4	0	1.000	0.163	−0.258	0.333	−0.414	−1.000	1.000	−1.000	−1.000	−0.822	1.000	1.000	−1.000	0.967
	Δ	−1.000	−0.228	0.264	0.040	−0.036	−0.821	−1.000	1.000	1.000	0.813	−1.000	−1.000	0.958	−1.000
	FL	−1.000	0.155	−0.133	−0.140	0.152	0.964	−1.000	−1.000	−1.000	−0.802	−1.000	−1.000	0.882	−0.873

0=absence of gene. For 3DP1, Δex2=the alleles missing exon 2; v = the alleles containing exon 2. For 2DS4, FL=full length alleles; Δ =deletion alleles