Table 2. Selected gene classes with differential expression in the two nutrient treatments.
| Direction | A | Log2 fold change | Fold change | Adjusted p-value | JGI ID | Bd specific | Life stage | |
| M36 | ||||||||
| Increased | 10.0 | 1.4 | 2.6 | 5.5E−03 | BATDEDRAFT_11205 | |||
| Increased | 9.3 | 4.2 | 18.4 | 2.0E−05 | BATDEDRAFT_1502 | S | ||
| Increased | 9.0 | 2.8 | 7.0 | 2.0E−06 | BATDEDRAFT_16613 | * | ||
| Increased | 8.8 | 2.2 | 4.6 | 1.4E−02 | BATDEDRAFT_1489 | |||
| Increased | 8.6 | 3.1 | 8.6 | 1.1E−04 | BATDEDRAFT_1469 | S | ||
| Increased | 9.3 | 3.8 | 13.9 | 1.2E−06 | BATDEDRAFT_12637 | S | ||
| Increased | 11.7 | 1.4 | 2.6 | 1.9E−02 | BATDEDRAFT_1639 | S | ||
| Decreased | 11.9 | −2.6 | 6.1 | 2.3E−05 | BATDEDRAFT_34483 | S | ||
| Decreased | 11.8 | −0.9 | 1.9 | 2.8E−02 | BATDEDRAFT_36120 | S | ||
| Decreased | 10.4 | −1.0 | 2.0 | 3.7E−03 | BATDEDRAFT_5302, BATDEDRAFT_37484 | S | ||
| Decreased | 13.0 | −2.3 | 4.9 | 2.8E−03 | BATDEDRAFT_36196 | |||
| S41 | ||||||||
| Increased | 8.4 | 3.5 | 11.3 | 9.3E−06 | BATDEDRAFT_85649 | S | ||
| Increased | 8.7 | 2.8 | 7.0 | 3.2E−05 | BATDEDRAFT_36653 | Z | ||
| Increased | 9.2 | 1.6 | 3.0 | 3.5E−03 | BATDEDRAFT_23534 | * | ||
| Increased | 9.4 | 2.7 | 6.5 | 5.2E−04 | BATDEDRAFT_23310 | |||
| Increased | 9.0 | 2.5 | 5.7 | 7.3E−04 | BATDEDRAFT_23544 | * | ||
| Increased | 8.8 | 2.3 | 4.9 | 4.1E−05 | BATDEDRAFT_24208, BATDEDRAFT_24207 | Z | ||
| Increased | 9.5 | 2.3 | 4.9 | 3.7E−05 | BATDEDRAFT_24156 | |||
| Increased | 8.4 | 1.7 | 3.2 | 1.5E−03 | BATDEDRAFT_87928 | * | ||
| Increased | 8.6 | 2.6 | 6.1 | 5.8E−06 | BATDEDRAFT_24985 | * | Z | |
| Increased | 8.7 | 4.0 | 16.0 | 7.0E−05 | BATDEDRAFT_25462 | * | ||
| Increased | 9.5 | 3.9 | 14.9 | 8.0E−06 | BATDEDRAFT_35365 | |||
| Increased | 8.0 | 2.2 | 4.6 | 1.7E−02 | BATDEDRAFT_90146 | S | ||
| Increased | 8.6 | 0.8 | 1.7 | 2.3E−02 | BATDEDRAFT_26287 | * | ||
| Increased | 8.6 | 3.5 | 11.3 | 5.5E−08 | BATDEDRAFT_27937 | S | ||
| Increased | 8.3 | 3.0 | 8.0 | 7.3E−07 | BATDEDRAFT_92476 | * | ||
| Decreased | 9.9 | −1.7 | 3.2 | 2.5E−03 | BATDEDRAFT_86314 | S | ||
| Decreased | 11.9 | −1.1 | 2.1 | 6.5E−03 | BATDEDRAFT_31623 | S | ||
| Decreased | 13.2 | −2.0 | 4.0 | 2.8E−02 | BATDEDRAFT_37569 | S | ||
| ASP | ||||||||
| Increased | 8.3 | 3.6 | 12.1 | 7.5E−08 | BATDEDRAFT_21660 | * | ||
| Increased | 8.2 | 3.4 | 10.6 | 1.6E−06 | BATDEDRAFT_22611 | * | ||
| Increased | 8.9 | 2.4 | 5.3 | 9.5E−06 | BATDEDRAFT_22623 | * | Z | |
| Increased | 8.1 | 3.1 | 8.6 | 6.9E−06 | BATDEDRAFT_86720 | * | ||
| Increased | 8.1 | 2.4 | 5.3 | 9.2E−06 | BATDEDRAFT_23192 | * | ||
| Increased | 8.8 | 4.1 | 17.1 | 1.3E−07 | BATDEDRAFT_23275 | * | ||
| Increased | 8.5 | 3.5 | 11.3 | 1.9E−07 | BATDEDRAFT_87177 | * | Z | |
| Increased | 8.9 | 4.5 | 22.6 | 7.5E−08 | BATDEDRAFT_87185 | * | ||
| Increased | 8.4 | 3.2 | 9.2 | 4.2E−06 | BATDEDRAFT_87250 | * | ||
| Increased | 8.3 | 3.8 | 13.9 | 5.2E−08 | BATDEDRAFT_23765 | * | ||
| Increased | 8.1 | 2.9 | 7.5 | 2.7E−06 | BATDEDRAFT_87859 | * | ||
| Increased | 8.4 | 2.8 | 7.0 | 8.8E−06 | BATDEDRAFT_87892 | * | ||
| Increased | 8.5 | 2.7 | 6.5 | 5.0E−06 | BATDEDRAFT_88273 | * | ||
| Increased | 7.7 | 2.6 | 6.1 | 4.6E−04 | BATDEDRAFT_24300 | * | ||
| Increased | 8.8 | 3.0 | 8.0 | 9.3E−06 | BATDEDRAFT_24380 | * | ||
| Increased | 8.3 | 3.5 | 11.3 | 3.9E−06 | BATDEDRAFT_24760 | * | ||
| Increased | 7.9 | 3.0 | 8.0 | 1.3E−03 | BATDEDRAFT_24767 | * | ||
| Increased | 8.5 | 2.5 | 5.7 | 3.0E−04 | BATDEDRAFT_25148 | * | ||
| Increased | 8.3 | 3.1 | 8.6 | 3.3E−07 | BATDEDRAFT_25666 | * | ||
| Increased | 8.3 | 2.5 | 5.7 | 1.1E−03 | BATDEDRAFT_36999 | |||
| Increased | 8.4 | 3.5 | 11.3 | 5.7E−07 | BATDEDRAFT_89345 | * | ||
| Increased | 8.1 | 2.9 | 7.5 | 3.2E−05 | BATDEDRAFT_25259 | * | ||
| Increased | 8.2 | 3.3 | 9.8 | 1.5E−06 | BATDEDRAFT_89380 | * | ||
| Increased | 7.8 | 2.8 | 7.0 | 1.6E−06 | BATDEDRAFT_25355 | * | ||
| Increased | 8.5 | 3.4 | 10.6 | 7.5E−08 | BATDEDRAFT_89821 | * | ||
| Increased | 8.4 | 4.5 | 22.6 | 4.0E−06 | BATDEDRAFT_25680 | |||
| Increased | 8.3 | 2.6 | 6.1 | 4.4E−05 | BATDEDRAFT_25784 | * | ||
| Increased | 7.8 | 2.9 | 7.5 | 1.1E−06 | BATDEDRAFT_89959 | * | ||
| Increased | 7.8 | 2.7 | 6.5 | 4.8E−03 | BATDEDRAFT_26088 | * | ||
| Increased | 7.8 | 2.9 | 7.5 | 4.8E−04 | BATDEDRAFT_26151 | * | ||
| Increased | 8.6 | 3.3 | 9.8 | 3.6E−06 | BATDEDRAFT_26132 | * | ||
| Increased | 9.0 | 5.7 | 52.0 | 9.8E−07 | BATDEDRAFT_90236 | * | ||
| Increased | 9.5 | 4.8 | 27.9 | 1.5E−04 | BATDEDRAFT_90237 | * | ||
| Increased | 7.8 | 2.5 | 5.7 | 9.6E−05 | BATDEDRAFT_26134 | * | ||
| Increased | 8.5 | 3.5 | 11.3 | 1.3E−06 | BATDEDRAFT_90267 | * | ||
| Increased | 8.2 | 3.5 | 11.3 | 1.2E−06 | BATDEDRAFT_26425 | * | ||
| Increased | 8.3 | 3.6 | 12.1 | 1.8E−06 | BATDEDRAFT_90625 | * | ||
| Increased | 8.0 | 2.9 | 7.5 | 2.3E−06 | BATDEDRAFT_26741 | * | ||
| Increased | 9.4 | 2.3 | 4.9 | 4.9E−06 | BATDEDRAFT_35725 | * | ||
| Increased | 9.2 | 2.1 | 4.3 | 6.2E−04 | BATDEDRAFT_90888 | * | ||
| Increased | 7.8 | 2.7 | 6.5 | 5.1E−05 | BATDEDRAFT_26762 | * | ||
| Increased | 9.0 | 3.8 | 13.9 | 1.2E−07 | BATDEDRAFT_26758 | * | ||
| Increased | 8.8 | 2.3 | 4.9 | 3.5E−03 | BATDEDRAFT_26748 | * | ||
| Increased | 8.7 | 3.9 | 14.9 | 1.3E−06 | BATDEDRAFT_90978 | * | ||
| Increased | 9.1 | 1.3 | 2.5 | 4.7E−04 | BATDEDRAFT_91075 | |||
| Increased | 8.0 | 2.8 | 7.0 | 2.9E−06 | BATDEDRAFT_27277 | * | ||
| Increased | 8.3 | 3.6 | 12.1 | 7.5E−08 | BATDEDRAFT_27069 | * | ||
| Increased | 8.3 | 2.5 | 5.7 | 3.5E−03 | BATDEDRAFT_27286 | |||
| Increased | 7.5 | 2.0 | 4.0 | 1.7E−02 | BATDEDRAFT_27286 | |||
| Increased | 8.4 | 4.0 | 16.0 | 6.0E−06 | BATDEDRAFT_27300 | * | ||
| Increased | 8.4 | 3.3 | 9.8 | 1.0E−05 | BATDEDRAFT_92020 | * | ||
| Increased | 7.9 | 2.5 | 5.7 | 7.5E−05 | BATDEDRAFT_27966 | * | ||
| Increased | 8.3 | 3.7 | 13.0 | 6.0E−08 | BATDEDRAFT_28166 | |||
| Increased | 8.2 | 2.6 | 6.1 | 6.2E−05 | BATDEDRAFT_28328 | * | ||
| Increased | 9.1 | 3.4 | 10.6 | 2.1E−06 | BATDEDRAFT_28256 | * | ||
| Increased | 8.3 | 2.7 | 6.5 | 7.0E−06 | BATDEDRAFT_92488 | * | Z | |
| Increased | 10.1 | 1.1 | 2.1 | 1.1E−02 | BATDEDRAFT_92592 | * | S | |
| Increased | 7.9 | 2.8 | 7.0 | 1.5E−07 | BATDEDRAFT_28513 | * | ||
| Increased | 8.7 | 3.9 | 14.9 | 5.5E−05 | BATDEDRAFT_92740 | |||
| Increased | 8.4 | 3.4 | 10.6 | 1.3E−07 | BATDEDRAFT_28541 | * | ||
| Increased | 7.5 | 1.5 | 2.8 | 5.1E−03 | BATDEDRAFT_28537 | * | ||
| Increased | 8.3 | 3.3 | 9.8 | 5.5E−06 | BATDEDRAFT_28684 | * | ||
| Decreased | 10.9 | −1.3 | 2.5 | 4.1E−03 | BATDEDRAFT_22179 | S | ||
| Decreased | 11.3 | −1.9 | 3.7 | 6.2E−05 | BATDEDRAFT_9451 | Z | ||
| Decreased | 13.3 | −1.7 | 3.2 | 1.1E−02 | BATDEDRAFT_16209 | |||
| Decreased | 11.2 | −1.3 | 2.5 | 8.1E−03 | BATDEDRAFT_87455, BATDEDRAFT_87454 | S | ||
| Decreased | 11.9 | −1.0 | 2.0 | 2.2E−02 | BATDEDRAFT_37184 | S | ||
| Decreased | 12.9 | −2.1 | 4.3 | 8.0E−04 | BATDEDRAFT_35816 | Z | ||
| Decreased | 12.4 | −2.1 | 4.3 | 2.7E−06 | BATDEDRAFT_4465 | * | Z | |
| Decreased | 13.2 | −1.1 | 2.1 | 9.7E−03 | BATDEDRAFT_37356 | * | ||
| Decreased | 12.6 | −1.1 | 2.1 | 1.9E−02 | BATDEDRAFT_28984 | S | ||
| Adhesin | ||||||||
| Increased | 9.0 | 1.9 | 3.7 | 2.0E−04 | BATDEDRAFT_84886 | |||
| Increased | 9.7 | 2.8 | 7.0 | 8.7E−04 | BATDEDRAFT_22355 | * | S | |
| Increased | 11.0 | 1.1 | 2.1 | 3.6E−02 | BATDEDRAFT_21697 | * | Z | |
| Increased | 8.8 | 1.8 | 3.5 | 9.8E−04 | BATDEDRAFT_85835 | |||
| Increased | 10.9 | 1.4 | 2.6 | 1.6E−02 | BATDEDRAFT_85893 | S | ||
| Increased | 10.4 | 1.2 | 2.3 | 8.6E−04 | BATDEDRAFT_22768 | * | ||
| Increased | 10.1 | 1.1 | 2.1 | 3.2E−02 | BATDEDRAFT_87248 | * | ||
| Increased | 9.7 | 1.3 | 2.5 | 4.4E−03 | BATDEDRAFT_87422 | * | S | |
| Increased | 8.1 | 2.7 | 6.5 | 4.9E−04 | BATDEDRAFT_23878 | * | Z | |
| Increased | 10.9 | 1.0 | 2.0 | 6.3E−03 | BATDEDRAFT_87864 | S | ||
| Increased | 8.9 | 2.9 | 7.5 | 9.7E−06 | BATDEDRAFT_87929 | * | ||
| Increased | 8.6 | 3.4 | 10.6 | 3.9E−06 | BATDEDRAFT_11071 | * | ||
| Increased | 8.1 | 2.9 | 7.5 | 1.1E−06 | BATDEDRAFT_90520 | * | ||
| Increased | 9.3 | 2.8 | 7.0 | 5.4E−05 | BATDEDRAFT_27092 | |||
| Increased | 8.2 | 3.2 | 9.2 | 1.0E−06 | BATDEDRAFT_27091 | * | ||
| Increased | 8.7 | 2.4 | 5.3 | 2.3E−05 | BATDEDRAFT_28554 | * | ||
| Increased | 8.5 | 3.5 | 11.3 | 7.5E−08 | BATDEDRAFT_93124 | |||
| Decreased | 10.7 | −1.6 | 3.0 | 3.7E−05 | BATDEDRAFT_84904 | S | ||
| Decreased | 10.8 | −2.0 | 4.0 | 2.3E−03 | BATDEDRAFT_34648 | S | ||
| Decreased | 13.2 | −0.9 | 1.9 | 1.8E−02 | BATDEDRAFT_35182 | |||
| Decreased | 11.5 | −2.5 | 5.7 | 4.1E−05 | BATDEDRAFT_91430 | S | ||
| CRN | ||||||||
| Increased | 10.3 | 1.4 | 2.6 | 4.5E−03 | BATDEDRAFT_84882 | * | ||
| Increased | 10.6 | 1.3 | 2.5 | 2.4E−03 | BATDEDRAFT_85109 | * | ||
| Increased | 7.9 | 2.8 | 7.0 | 3.4E−05 | BATDEDRAFT_86517 | * | ||
| Increased | 9.0 | 2.1 | 4.3 | 9.3E−03 | BATDEDRAFT_31422 | * | Z | |
| Increased | 8.0 | 2.2 | 4.6 | 1.4E−02 | BATDEDRAFT_23217 | * | ||
| Increased | 11.2 | 4.3 | 19.7 | 5.5E−05 | BATDEDRAFT_87221 | * | Z | |
| Increased | 9.4 | 2.0 | 4.0 | 5.7E−03 | BATDEDRAFT_87524 | * | Z | |
| Increased | 8.9 | 3.0 | 8.0 | 2.4E−05 | BATDEDRAFT_24811 | * | Z | |
| Increased | 8.6 | 1.2 | 2.3 | 3.1E−02 | BATDEDRAFT_37012 | * | Z | |
| Increased | 8.4 | 2.5 | 5.7 | 4.7E−03 | BATDEDRAFT_26085 | * | Z | |
| Increased | 8.8 | 1.9 | 3.7 | 4.2E−03 | BATDEDRAFT_26137 | * | Z | |
| Increased | 9.3 | 1.7 | 3.2 | 4.5E−03 | BATDEDRAFT_90343 | * | Z | |
| Increased | 8.9 | 1.6 | 3.0 | 6.2E−03 | BATDEDRAFT_90726 | * | Z | |
| Increased | 8.0 | 3.0 | 8.0 | 1.5E−03 | BATDEDRAFT_26749 | * | Z | |
| Increased | 8.4 | 2.5 | 5.7 | 4.3E−04 | BATDEDRAFT_28183 | * | Z | |
| Decreased | 12.3 | −1.7 | 3.2 | 7.6E−04 | BATDEDRAFT_36061 | * | Z | |
| Lipase 3 | ||||||||
| Increased | 8.5 | 3.6 | 12.1 | 1.4E−07 | BATDEDRAFT_86691 | * | Z | |
| Increased | 9.1 | 2.2 | 4.6 | 8.4E−04 | BATDEDRAFT_86693 | |||
| Increased | 9.0 | 2.7 | 6.5 | 2.6E−05 | BATDEDRAFT_89307 | * | ||
| Increased | 9.0 | 1.8 | 3.5 | 8.7E−05 | BATDEDRAFT_26489 | * | Z | |
| Increased | 8.5 | 3.8 | 13.9 | 1.5E−06 | BATDEDRAFT_26490 | * | ||
| Increased | 8.3 | 1.8 | 3.5 | 1.7E−03 | BATDEDRAFT_26491 | |||
| Increased | 8.5 | 3.0 | 8.0 | 1.1E−06 | BATDEDRAFT_93190 | * | ||
| Increased | 8.6 | 3.6 | 12.1 | 4.8E−06 | BATDEDRAFT_93191 | * | ||
The “direction” column indicates whether genes showed increased or decreased expression in the frog skin treatment (relative to the tryptone treatment). Both log2 fold change and absolute-value fold change are given. The p-values are Benjamini and Hochberg corrected for multiple testing. The “Bd-specific” column indicates with asterisks those genes that were found to be unique to Bd [31]. The “life stage” column indicates those genes that were found to have significantly increased expression in the zoospore (Z) or sporangia (S) life stage [30].