Table 2.
Average ratio DEDC Level vs. controlsa | t-testb(p <) | Accession No.c | Protein identificationd | Protein |
---|---|---|---|---|
| ||||
−1.94 | .01 | ECHA_RAT Q64428 | Hydroxyacyl-Coenzyme Adehydrogenase | |
−1.91 | .01 | 77,15(l),0,23% | ||
−1.79 | .01 | 56,12(1),2,12% | ||
−2.01 | .01 | |||
| ||||
1.22 | .05 | CN37_RAT P13233 | 243,11,9,23% | 2',3'-cyclic-nucleotide 3'-phosphodiesterase-Rattus norvegicus |
1.3 | .05 | 288,16,7,30% | ||
1.33 | .05 | 249,17,6,33% | ||
1.25 | .05 | 120,12,4,23% | ||
| ||||
1.32 | .05 | DHPR_RAT P11348 | 86,6,3,18% | Dihydropteridine reductase- Rattus norvegicus |
| ||||
1.33 | .05 | GSTP1_RAT P04906 | 71,7,1,30% | Glutathione S-transferase P- Rattus norvegicus |
| ||||
1.38 | .05 | MBP_RAT P02688 | 273,16,7,59% | Myelin basic protein S- Rattus norvegicus |
1.4 | .05 | 145,12,3,48% |
average volume ratios for each protein spot identified
level of significance determined by students t-test using DeCyder software version 6.5 using the mixed sample internal standard methodology
Swiss-Prot database
Imported from MASCOT and GPS Explorer. Data include predicted MW and pi to correlate with gel position (see supplementary material for annotated gel images), and the additional four scores: the four numbers associated with the protein identifications: e.g., 951 ,16(1)2 ,33 ,31%4 represent:
1MOWSE score. MOlecular Weight SEarch score, a statistic calculated by the MASCOT database search algorithm. The 95th percentile cutoff is calculated for each search and indicated at the bottom of each analysis summary. About 5% of random matches could yield higher MOWSE scores. See matrixscience.com for more details.
2peptide #. number of peptide ion masses matched (number of un-matched ions).
3ms2 #. number of matching peptide ions with MS/MS data.
4(%coverage). Percent of the amino acids accounted for by the matching peptides