Table 3.

Common TF motif families in the promoters of 36 genes belonging to cluster 2 and to the categories “immune response” and “inflammatory response.” The percentage column depicts the percentage of genes whose promoters have at least one match with the respective motif family. Percentages and P value calculations are based on mouse promoters.

Family	Description	P value	%
V$CTCF	CTCF and BORIS gene family	0.00000185	86
V$MZF1	Myeloid zinc finger 1 factors	0.00000878	89
V$EGRF	EGR/nerve growth factor induced protein C and related factors	0.00011981	86
V$SRFF	Serum response element binding factor	0.00012387	83
V$PLAG	Pleomorphic adenoma gene	0.00015650	86
V$GREF	Glucocorticoid responsive elements	0.00016410	92
V$KLFS	Krueppel like transcription factors	0.00024104	100
V$GLIF	GLI zinc finger family	0.00170920	81
V$STAT	Signal transducer and activator of transcription	0.00177177	92
V$PAX5	PAX-2/5/8 binding sites	0.00246076	89
V$E2FF	E2F-myc activator/cell cycle regulator	0.00400401	86
V$XBBF	X-box binding factors	0.00470139	89
V$GATA	GATA binding factors	0.00499105	94
V$PAX6	PAX-4/PAX-6 paired domain binding sites	0.00504198	89
V$ETSF	Human and murine ETS1 factors	0.00646776	100
V$GCMF	Chorion-specific TFs with a GCM DNA binding domain	0.00921126	83
V$HEAT	Heat shock factors	0.01639280	92
V$RXRF	RXR heterodimer binding sites	0.01834270	97
V$FKHD	Fork head domain factors	0.02095320	94
V$IRFF	Interferon regulatory factors	0.02221250	86
V$HAND	Twist subfamily of class B bHLH transcription factors	0.03199970	94
V$ABDB	Abdominal-B type homeodomain transcription factors	0.04170260	89