TABLE 1.
Amplification target | Forward primer | Reverse primer | Amplicon length (bp) |
---|---|---|---|
rpoB | 5′-TCCTCTAAGGGCTCTCGTT-3′ (19 nta) | 5′-GTCAGGTACACGATCTCGT-3′ (19 nt) | 1,625 |
rpoBII (second half) | 5′-ATCGAAACGCCGTACCGCAA-3′ (20 nt) | 5′-TGACGTCGAGCACGTAACTCCCT-3′ (23 nt) | 2,056 |
katG | 5′-ACACCAACTCCTGGGAAGGAAT-3′ (21 nt) | 5′-TGATCGCACATCCAGCACATTT-3′ (22 nt) | 2,447 |
pncA | 5′-GACGGATTTGTCGCTCACTAC-3′ (21 nt) | 5′-GCCGGAGACGATATCCAGAT-3′ (20 nt) | 960 |
gyrA | 5′-AAGGATGTTCGGTTCCTGGAT-3′ (21 nt) | 5′-TAACACTCGTACCCGGCT-3′ (18 nt) | 2,664 |
rrs (16S) | 5′-TTCTAAATACCTTTGGCTCCCT-3′ (22 nt) | 5′-TGGCCAACTTTGTTGTCATGCA-3′ (22 nt) | 1,680 |
Total | 11,432 total (5 genes) |
nt, nucleotides.