TABLE 1.
Species by 16S rRNA sequencing | No. of isolates (%) | Agreement by BD Phoenix (%) | Agreement by API 20S (%) | Agreement using Biotyper >2 (%) | Agreement using Biotyper >1.7 (%) |
---|---|---|---|---|---|
Mitis group | 28 (61)a | 15 (54)c | 21 (75)c | 17 (61)c | 18 (64)c |
S. mitis | 20 (71)b | 3 (18)d | 9 (45)d | 0 (0)d | 0 (0)d |
S. oralis | 7 (25) | 2 (22) | 0 (0) | 4 (57) | 4 (57) |
S. infantis | 1 (4) | 0 (0) | 0 (0) | 0 (0) | 0 (0) |
Sanguinis group | 11 (24)a | 8 (73)c | 3 (27)c | 8 (73)c | 10 (91)c |
S. sanguinis | 4 (36.5)b | 3 (75)d | 1 (17)d | 3 (75)d | 4 (100)d |
S. gordonii | 5 (45.5) | 2 (40) | 0 (0) | 5 (100) | 5 (100) |
S. parasanguinis | 2 (18) | 2 (100) | 0 (0) | 0 (0) | 1 (50) |
Bovis group | 2 (4)a | 0 (0)c | 2 (100)c | 2 (100)c | 2 (100)c |
Streptococcus lutetiensis | 2 (100)b | 0 (0)d | 0 (0)d | 2 (100)d | 2 (100)d |
Anginosus group | 2 (4)a | 2 (100)c | 1 (50)c | 2 (100)c | 2 (100)c |
Streptococcus anginosus | 2 (100)b | 2 (100)d | 0 (0)d | 2 (100)d | 2 (100)d |
Salivarius group | 1 (2)a | 1 (100)c | 1 (100)c | 0 (0)c | 1 (100)c |
Streptococcus salivarius | 1 (100)b | 1 (100)d | 1 (100)d | 0 (0)d | 1 (100)d |
Mutans group | 1 (2)a | 1 (100)c | 1 (100)c | 1 (100)c | 1 (100)c |
S. mutans | 1 (100)b | 1 (100)d | 1 (100)d | 1 (100)d | 1 (100)d |
Granulicatella adiacense | 1 (2)a | 0 (0) | 0 (0) | 0 (0) | 1 (100)d |
Total | 46 | ||||
Total agreement by groupe | 27 (59) | 29 (63) | 30 (65) | 34 (74) | |
Total agreement by species | 16 (35) | 12 (26) | 17 (37) | 21 (46) |
Percentage of all isolates in each streptococcal group.
Percentage of each species within each streptococcal group.
Percentage of each group assigned to correct group by a test.
Percentage of each species assigned to correct species by a test.
Granulicatella adiacens isolate not included when considering results by group.