TABLE 2.
SNPs/indels found per L. (V.) braziliensis locus studied and frequencies of their alleles in the sample
| Locus (band)a and polymorphism | Chromosomal position | Alleles (proportion of L. [V.] braziliensis isolates with each allele)b |
|---|---|---|
| CHR 24/3074 (B1) | ||
| SNP24/3099ag | 3099 | A/G (0.23/1) |
| SNP24/3120ga | 3120 | G/A (0.23/1) |
| SNP24/3136ta | 3136 | T/A (0.23/1) |
| SNP24/3197ag | 3197 | A/G (0.23/1) |
| Indel24/3207a- | 3207 | A/indel (0.23/1) |
| SNP24/3537ct | 3537 | C/T (0.23/1) |
| SNP24/3672tc | 3672 | T/C (0.23/1) |
| CHR 26/765c (B2) | ||
| SNP26/808ca | 808 | C/A (0.90/0.42) |
| Indel26/815-c | 815 | Indel/C (1/0.17) |
| SNP26/909ga | 909 | G/A (0.77/0.77) |
| SNP26/953tg | 953 | T/G (0.77/0.81) |
| SNP26/1007ga | 1007 | G/A (0.77/0.81) |
| SNP26/1050ac | 1050 | A/C (0.77/0.81) |
| CHR 28/195696 (B3) | ||
| SNP28/195926gc | 195926 | G/C (0.77/0.83) |
| SNP28/196016cg | 196016 | C/G (0.77/0.83) |
| SNP28/196100ga | 196100 | G/A (0.77/0.86) |
| CHR 28/425451 (B4) | ||
| SNP28/425481tc | 425481 | T/C (0.8/0.74) |
| SNP28/425737ct | 425737 | C/T (0.83/0.71) |
| Indel28/425996t- | 425996 | T/indel (0.69/0.83) |
| CHR 32/1356278 (B5) | ||
| SNP32/1356321gt | 1356321 | G/T (0.97/0.31) |
| SNP32/1356500ca | 1356500 | C/A (0.94/0.61) |
| Indel32/1356597c- | 1356597 | C/indel (1/0.12) |
| SNP32/1356598ca | 1356598 | C/A (0.94/0.53) |
| SNP32/1356599ca | 1356599 | C/A (1/0.12) |
| CHR 35/335652 (B6) | ||
| SNP35/335735ca | 335735 | C/A (1/0.23) |
| SNP35/336018tc | 336018 | T/C (1/0.08) |
| SNP35/336094ca | 336094 | C/A (1/0.06) |
a
Corresponding band in Fig. 1.
b
Proportion of isolates presenting the particular allele at the specified locus.
c
This locus is duplicated in chromosome 33 at position 1476284.