TABLE 3.
Comparison of ZH548 and MP-12 subpopulations with other Egyptian strains
| Segment | Location | Nucleotide position at antiviral sense sequence | Nucleotide |
|||||
|---|---|---|---|---|---|---|---|---|
| Egyptian RVFV strains |
ZH548 subpopulation | MP-12 subpopulation | ||||||
| ZH548 | ZH501 | ZH1776 | ZS6365 | |||||
| S | N | 77 | U | —a | C | — | — | — |
| N | 369 | U | C | C | C | C | — | |
| N | 420 | G (Ile)b | — | A (Val) | — | — | — | |
| N | 461 | G | A | A | A | A | — | |
| N | 599 | A | G | — | G | — | — | |
| N | 716 | C | U | — | — | U | — | |
| NSs | 1208 | U (Lys) | — | C (Arg) | C | — | — | |
| NSs | 1570 | G | — | A | — | — | — | |
| M | Gn | 715 | U (Leu) | A (Gln) | A (Gln) | A (Gln) | A (Gln) (57%) | |
| Gn | 1439 | C | — | U | — | — | — | |
| Gn | 1717 | A (Asp) | — | — | G (Gly) | — | — | |
| Gn | 1824 | A (Ile) | G (Val) | — | — | — | — | |
| Gc | 2234 | G | — | — | A | — | — | |
| Gc | 2324 | C | — | U | U | — | — | |
| Gc | 2711 | U | C | — | — | — | — | |
| Gc | 2981 | C (Asp) | U (Asp) | — | — | — | A (Glu) | |
| Gc | 3017 | U | — | — | C | — | — | |
| Gc | 3545 | C | — | U | U | — | — | |
| 5′ UTR | 3655 | U | C | — | — | — | — | |
| 5′ UTR | 3678 | A | G | — | — | — | — | |
| L | L | 822 | A | C | C | C | — | — |
| L | 1057 | C | U | U | U | — | — | |
| L | 1173 | C | U | — | — | — | — | |
| L | 1427 | G (Ser) | A (Asn) | A (Asn) | A (Asn) | A (Asn) | — | |
| L | 1496 | G (Arg) | — | — | A (Lys) | — | — | |
| L | 1560 | C | — | U | — | — | — | |
| L | 2370 | G | — | A | — | — | — | |
| L | 3385 | A (Ser) | G (Gly) | — | — | — | — | |
| L | 3768 | U | C | C | C | C | — | |
| L | 4019 | C (Thr) | — | U (Ile) | — | — | — | |
| L | 4305 | A | — | — | G | — | — | |
| L | 4413 | C | U | — | — | — | — | |
| L | 5172 | A (Gln) | — | — | G (Gln) | C (His) | — | |
| L | 5238 | A | — | G | — | — | — | |
| L | 5286 | G | — | — | A | — | — | |
| L | 5406 | G | A | A | A | — | — | |
| L | 5495 | C (Ser) | — | U (Leu) | U (Leu) | — | — | |
| L | 5783 | A (Lys) | G (Arg) | — | — | — | — | |
| L | 6207 | C | — | U | — | — | — | |
| L | 6250 | C | — | U | U | — | — | |
| 5′ UTR | 6303 | G | A | A | A | A | — | |
a
—, sequence identical to that of ZH548.
b
Amino acids in parentheses indicate the amino acid encoded by the corresponding codon. A lack of amino acids in parentheses indicates no amino acid substitution.