Table 5.
SAMHD1 Polymorphisms Genotyped in the European Cohort of 516 HIV-1 Controllers and 1196 HIV-1 Progressors
| SNP # | SNP ID (sequences) | Position (chromosome 20) | p value | Frequency (HapMap) | Odds ratio | Standard error |
|---|---|---|---|---|---|---|
| 1 | rs4810362 (A>G) | Intron 1 (35012094) | 0.753811 | 0.1626 | 1.0361 | 0.217844 |
| 2 | rs6030346 (G>T) | Intron 2 (35007258) | 0.716925 | 0.0777 | 1.0485 | 0.249704 |
| 3 | rs6065494 (A>T) | Intron 3 (34998103) | 0.127526 | 0.7937 | 1.1499 | 0.166885 |
| 4 | rs6072746 (A>C) | Intron 4 (34992766) | 0.759989 | 0.4563 | 1.0247 | 0.154753 |
| 5 | rs6016783 (T>G) | Intron 5 (34989606) | 0.395236 | 0.4175 | 1.0710 | 0.152653 |
| 7 | rs12481143 (G>A) | Intron 11 (34970620) | 0.893253 | 0.7694 | 1.0126 | 0.181413 |
| 8 | rs1291142 (G>A) | Intron 15 (34958776) | 0.320922 | 0.3592 | 1.0852 | 0.154799 |
The results were derived from the analysis of the dataset at www.broadinstitute.org/mpg/ricopili/