Table 1.

Summary of the identifications obtained for plant proteins using both LC-MS/MS and LC-MS^Eanalyses

Protein band		Protein identification			Mascot (LC-MS/MS)			PLGS (LC-MSE)
nb	MW	Description	Accession	MW	Score	Peptides	Coverage	Score	Peptides	Coverage
1	22.3	B. rapa class IV Chitinase	BAH03380	28.7	115	2	13	2218	3	19.8
		B. rapa thaumatin-like	AAN23104	9.2*	-	-	-	5885	5	42.8
2	26.3	ni
3	28.6	ni
4	35.6	B. juncea β-1,3-glucanase	ABC94638	37.8	574	8	32	10332	43	47.2
		B. rapa β-1,3-glucanase	BAG68207	40.3	207	3	10	491	5	10.2
5	41.1	B. rapa Polygalacturonase-inhibiting prot 3	ACP28176	37.6	94	4	14	-	-	-
		B. napus peroxidase	CBD08867	38.4	-	-	-	1878	21	14.6
6	44.3	A. lyrata peroxidase 33	XP_002875944	39.0	190	4	9	-	-	-
		B. napus peroxidase	CAW62882	38.9	-	-	-	1617	27	13.8
7	43.7	B. rapa Polygalacturonase-inhibiting prot 3	ACP28176	37.6	165	5	18	-	-	-
8	25.3	ni
9	25.6	A. lyrata glycosyl hydrolase family 38	XP_002871594	116.3	133	3	2	561	11	3.6
10	28.1	B. napus cysteine protease	ABA71355	39.4	-	-	-	2039	11	15.3
11	30.1	ni

*This accession corresponds to a partial protein sequence. ni: no identification.