Table 4.
Transcript abundance of each GH11, GH28 and GH45 in P. cochleariae larvae and adults based on a mapping of Illumina reads to the ORFs of the PCWDEs
|
Name |
cds (bp)a |
LGb |
LRb |
AGb |
ARb |
||||
|---|---|---|---|---|---|---|---|---|---|
| Readsc | RPKMd | readsc | RPKMd | readsc | RPKMd | readsc | RPKMd | ||
|
GH11 | |||||||||
| GH11-2* |
654 |
7091 |
14,46935 |
18 |
7,59882 |
4098 |
13,81739 |
2 |
4,09316 |
| GH11-1* |
654 |
4018 |
13,64994 |
13 |
7,12934 |
2375 |
13,03126 |
1 |
3,09316 |
|
GH28 | |||||||||
| GH28-9* |
1113 |
104975 |
17,62099 |
420 |
11,3895 |
108541 |
17,8029 |
69 |
8,51589 |
| GH28-1* |
1101 |
52323 |
16,60188 |
182 |
10,18524 |
33084 |
16,07982 |
16 |
6,3417 |
| GH28-3* |
1116 |
25617 |
15,55142 |
121 |
9,58866 |
23003 |
15,53571 |
39 |
7,60758 |
| GH28-4 |
1110 |
17208 |
14,98799 |
42 |
8,05802 |
14477 |
14,87829 |
54 |
8,08485 |
| GH28-2 |
1089 |
10944 |
14,36062 |
64 |
8,69326 |
12377 |
14,67758 |
31 |
7,31171 |
| GH28-7* |
1125 |
10075 |
14,19475 |
33 |
7,69073 |
20121 |
15,33691 |
19 |
6,55852 |
| GH28-6* |
1128 |
5395 |
13,28797 |
18 |
6,81242 |
8822 |
14,13731 |
10 |
5,62868 |
| GH28-8 |
1125 |
2254 |
12,03587 |
18 |
6,81626 |
2093 |
12,07132 |
14 |
6,11795 |
| GH28-5 |
1110 |
2213 |
12,02813 |
30 |
7,5758 |
2618 |
12,40896 |
23 |
6,85352 |
|
GH45 | |||||||||
| GH45-1* |
729 |
25102 |
16,13723 |
104 |
9,97271 |
21358 |
16,04375 |
15 |
6,84342 |
| GH45-3* |
732 |
15902 |
15,51018 |
102 |
9,96678 |
13460 |
15,39577 |
33 |
8,05989 |
| GH45-8 |
729 |
15813 |
15,47135 |
73 |
9,46209 |
17763 |
15,77897 |
21 |
7,32885 |
| GH45-7* |
726 |
13114 |
15,20774 |
60 |
9,18511 |
15761 |
15,61229 |
24 |
7,52744 |
| GH45-4* |
723 |
6088 |
14,11546 |
21 |
7,67651 |
10930 |
15,09838 |
8 |
6,11838 |
| GH45-5* |
723 |
4651 |
13,72137 |
27 |
8,03908 |
6289 |
14,2971 |
22 |
7,40788 |
| GH45-6 |
726 |
365 |
10,04911 |
1 |
3,27822 |
557 |
10,79833 |
12 |
6,52744 |
|
References | |||||||||
| eIF4A |
1263 |
11457 |
14,21229 |
14111 |
16,26465 |
10960 |
14,28746 |
11633 |
15,64997 |
| EF1α | 1389 | 67267 | 16,62849 | 90280 | 18,80497 | 63998 | 16,69593 | 61492 | 17,91526 |
aLength of the full length coding DNA sequences (cds) in base pairs. bSequences were generated from four independent RNA pools: larval gut (LG), larval rest body (LR), adult gut (AG) and adult rest body (AR). cAbsolute numbers of reads mapped to each ORF corresponding to a putative PCWDE for each specific RNA pool. dThe number of reads per kilobase and per million (RPKM values) are log2 transformed (see ‘Experimental section’). * indicates that the corresponding proteins were identified from the proteomic analysis.