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. Author manuscript; available in PMC: 2013 Oct 1.
Published in final edited form as: Birth Defects Res A Clin Mol Teratol. 2012 Sep 13;94(10):762–769. doi: 10.1002/bdra.23065

Table 2.

Population frequency of rare allele of selected SOD2 SNPs

Gene Chr SNP chr loc Signif. A1 A2 CaucA. C n=290 f(A1) CauA Pat. n=458 F(A1) MexA C n=184 f(A1) MexA Pat n=672 f(A1)
SOD2 6 rs5746136 160023074 int5 A G 0.30 0.31 0.26 0.28
SOD2 6 rs2758331 160025060 int4 A C 0.45 0.50 0.58 0.52
SOD2 6 rs5746129 160025933 p.W156R T C 0.004 0.00 0.01 0.00
SOD2 6 rs2855116 160026115 int3 G T 0.46 0.48 0.55 0.53
SOD2 6 rs2070994 160029041 int3 A T 0.45 0.50 0.57 0.54
SOD2 6 rs2758339 160032574 int2 C A 0.53 0.50 0.42 0.43
SOD2 6 rs5746105 160032628 int2 C T 0.31 0.31 0.28 0.28
SOD2 6 rs4987023 160033683 p.R76G A G 0.00 0.00 0.02 0.00
SOD2 6 rs5746097 160033712 p.V66E T A 0.01 0.00 0.00 0.00
SOD2 6 rs1799725 160033862 p.A16V T C 0.18 0.14 0.10 0.11

Notes: Chr – chromosome number, loc – location, signif – significance of SNP by function or location with respect to gene loci, int-intron, A1 – rare allele, A2 – common allele, CauA – Caucasian American, MexA – Mexican American, Pat – patient with MM, C- SNP control population, n=number of chromosomes tested, f(A1) – frequency of rare allele