Table 2.
Gene | Chr | SNP | chr loc | Signif. | A1 | A2 | CaucA. C n=290 f(A1) | CauA Pat. n=458 F(A1) | MexA C n=184 f(A1) | MexA Pat n=672 f(A1) |
---|---|---|---|---|---|---|---|---|---|---|
SOD2 | 6 | rs5746136 | 160023074 | int5 | A | G | 0.30 | 0.31 | 0.26 | 0.28 |
SOD2 | 6 | rs2758331 | 160025060 | int4 | A | C | 0.45 | 0.50 | 0.58 | 0.52 |
SOD2 | 6 | rs5746129 | 160025933 | p.W156R | T | C | 0.004 | 0.00 | 0.01 | 0.00 |
SOD2 | 6 | rs2855116 | 160026115 | int3 | G | T | 0.46 | 0.48 | 0.55 | 0.53 |
SOD2 | 6 | rs2070994 | 160029041 | int3 | A | T | 0.45 | 0.50 | 0.57 | 0.54 |
SOD2 | 6 | rs2758339 | 160032574 | int2 | C | A | 0.53 | 0.50 | 0.42 | 0.43 |
SOD2 | 6 | rs5746105 | 160032628 | int2 | C | T | 0.31 | 0.31 | 0.28 | 0.28 |
SOD2 | 6 | rs4987023 | 160033683 | p.R76G | A | G | 0.00 | 0.00 | 0.02 | 0.00 |
SOD2 | 6 | rs5746097 | 160033712 | p.V66E | T | A | 0.01 | 0.00 | 0.00 | 0.00 |
SOD2 | 6 | rs1799725 | 160033862 | p.A16V | T | C | 0.18 | 0.14 | 0.10 | 0.11 |
Notes: Chr – chromosome number, loc – location, signif – significance of SNP by function or location with respect to gene loci, int-intron, A1 – rare allele, A2 – common allele, CauA – Caucasian American, MexA – Mexican American, Pat – patient with MM, C- SNP control population, n=number of chromosomes tested, f(A1) – frequency of rare allele