Table 3.
TDT results on SOD1 SNPs association with MM among all patients
| CHR | SNP | A1 | A2 | T | U | OR | CHISQ | P | EMP-P |
|---|---|---|---|---|---|---|---|---|---|
| SOD1 | rs202446 | A | C | 20 | 40 | 0.5000 | 6.6670 | 0.0098 | 0.0133 |
| SOD1 | rs202447 | T | G | 6 | 20 | 0.3000 | 7.5380 | 0.0060 | 0.0154 |
| SOD1 | rs11910115 | C | A | 6 | 7 | 0.8571 | 0.0769 | 0.7815 | 1.0000 |
| SOD1 | rs4816405 | G | C | 85 | 122 | 0.6967 | 6.6140 | 0.0101 | 0.0125 |
| SOD1 | rs4998557 | A | G | 77 | 95 | 0.8105 | 1.8840 | 0.1699 | 0.1629 |
| SOD1 | rs2070424 | G | A | 69 | 104 | 0.6635 | 7.0810 | 0.0078 | 0.0071 |
| SOD1 | rs1041740 | T | C | 142 | 163 | 0.8712 | 1.4460 | 0.2292 | 0.2304 |
Notes: A1 – rare allele, A2 – common allele, T – number of A1 Transmitted, U – number of A1 not transmitted, OR – Odds Ratio, CHISQ – chi square, p-value – PLINK TDT probability, EMP-p – p-value from empirical probability test by permutation. Significant SNPs are bolded.