Table 5.
TDT results on SOD2 SNPs association with MM among all patients
| Gene | SNP | A1 | A2 | T | U | OR | CHISQ | P | EMP-P |
|---|---|---|---|---|---|---|---|---|---|
| SOD2 | rs5746136 | A | G | 104 | 122 | 0.8525 | 1.4340 | 0.2312 | 0.2311 |
| SOD2 | rs2758331 | A | C | 119 | 106 | 1.1230 | 0.7511 | 0.3861 | 0.4147 |
| SOD2 | rs5746129 | T | C | 0 | 2 | 0.0000 | 2.0000 | 0.1573 | 0.5018 |
| SOD2 | rs2855116 | T | G | 108 | 121 | 0.8926 | 0.7380 | 0.3903 | 0.4289 |
| SOD2 | rs2070994 | T | A | 137 | 152 | 0.9013 | 0.7785 | 0.3776 | 0.3915 |
| SOD2 | rs2758339 | A | C | 144 | 152 | 0.9474 | 0.2162 | 0.6419 | 0.6812 |
| SOD2 | rs5746105 | C | T | 92 | 124 | 0.7419 | 4.7410 | 0.0295 | 0.0330 |
| SOD2 | rs4987023 | A | G | 0 | 1 | 0.0000 | 1.0000 | 0.3173 | 1.0000 |
| SOD2 | rs5746097 | T | A | 0 | 3 | 0.0000 | 3.0000 | 0.0833 | 0.2515 |
| SOD2 | rs1799725 | T | C | 20 | 33 | 0.6061 | 3.1890 | 0.0742 | 0.0925 |
Notes: A1 – rare allele, A2 – common allele, T – number of A1 Transmitted, U – number of A1 not transmitted, OR – Odds Ratio, CHISQ – chi square, p-value – PLINK TDT probability, EMP-p – p-value from empirical probability test by permutation. Significant SNP is bolded.