Table 6.

TDT Results on SOD2 SNP associations stratified by ethnicity

CHR	SNP	BP	A1	A2	T	U	OR	CHISQ	P
Caucasian Families
SOD2	rs5746136	160023074	A	G	51	51	1.0000	0.0000	1.0000
SOD2	rs2758331	160025060	C	A	50	53	0.9434	0.0874	0.7675
SOD2	rs5746129	160025933	T	C	0	1	0.0000	1.0000	0.3173
SOD2	rs2855116	160026115	T	G	56	53	1.0570	0.0826	0.7738
SOD2	rs2070994	160029041	T	A	68	66	1.0300	0.0299	0.8628
SOD2	rs2758339	160032574	A	C	68	67	1.0150	0.0074	0.9314
SOD2	rs5746105	160032628	C	T	47	62	0.7581	2.0640	0.1508
SOD2	rs4987023	160033683	A	G	0	0	NA	NA	NA
SOD2	rs5746097	160033712	T	A	0	2	0.0000	2.0000	0.1573
SOD2	rs1799725	160033862	T	C	10	13	0.7692	0.3913	0.5316
Mexican Families
SOD2	rs5746136	160023074	A	G	47	59	0.7966	1.3580	0.2438
SOD2	rs2758331	160025060	C	A	54	61	0.8852	0.4261	0.5139
SOD2	rs5746129	160025933	T	C	0	0	NA	NA	NA
SOD2	rs2855116	160026115	T	G	49	57	0.8596	0.6038	0.4371
SOD2	rs2070994	160029041	T	A	65	76	0.8553	0.8582	0.3543
SOD2	rs2758339	160032574	A	C	71	73	0.9726	0.0278	0.8676
SOD2	rs5746105	160032628	C	T	40	53	0.7547	1.8170	0.1776
SOD2	rs4987023	160033683	A	G	0	1	0.0000	1.0000	0.3173
SOD2	rs5746097	160033712	T	A	0	0	NA	NA	NA
SOD2	rs1799725	160033862	T	C	10	14	0.7143	0.6667	0.4142

Notes: A1 – rare allele, A2 – common allele, T – number of A1 Transmitted, U – number of A1 not transmitted, OR – Odds Ratio, CHISQ – chi square, p-value – PLINK TDT probability, p – p-value from empirical probability test by permutation.